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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS01175 and HGI48_RS01180 are separated by 105 nucleotides
HGI48_RS01180 and HGI48_RS01185 are separated by 55 nucleotides
HGI48_RS01185 and HGI48_RS01190 overlap by 1 nucleotides
HGI48_RS01190 and HGI48_RS01195 are separated by 91 nucleotides
HGI48_RS01175: HGI48_RS01175 - sigma D regulator, at 263,985 to 264,434
_RS01175
HGI48_RS01180: HGI48_RS01180 - NAD(+) diphosphatase, at 264,540 to 265,313
_RS01180
HGI48_RS01185: HGI48_RS01185 - uroporphyrinogen decarboxylase, at 265,369 to 266,442
_RS01185
HGI48_RS01190: HGI48_RS01190 - deoxyribonuclease V, at 266,442 to 267,116
_RS01190
HGI48_RS01195: HGI48_RS01195 - YjaG family protein, at 267,208 to 267,798
_RS01195
Group
Condition
HGI48
_RS01175
HGI48
_RS01180
HGI48
_RS01185
HGI48
_RS01190
HGI48
_RS01195
control
PDB
-0.3
-0.1
N.D.
+0.0
-0.8
plant
Atlantic
-0.0
-0.0
N.D.
-0.1
-0.9
plant
Atlantic
+0.1
+0.2
N.D.
-0.6
-0.7
carbon source
M9+polygalacturonate
+0.5
-0.3
N.D.
+0.3
-1.3
plant
Atlantic
-0.0
+0.1
N.D.
-0.1
-0.7
control
LB
+0.1
-0.2
N.D.
+0.0
-0.7
control
PDB
-0.2
-0.1
N.D.
-0.1
-0.3
carbon source
M9+polygalacturonate
+0.9
+0.0
N.D.
-0.0
-1.6
control
PDB
+0.1
-0.0
N.D.
-0.2
-0.5
plant
Atlantic
+0.3
-0.6
N.D.
-0.3
-0.0
control
LB
-0.0
+0.1
N.D.
-0.1
-0.5
plant
Atlantic
+0.2
-0.1
N.D.
-0.1
-0.5
carbon source
M9+glycerol
+0.4
-0.2
N.D.
+0.1
-0.6
plant
Norland
+0.1
+0.3
N.D.
-0.2
-0.4
plant
Norland
-0.0
-0.1
N.D.
+0.2
-0.3
plant
Norland
+0.2
+0.2
N.D.
-0.0
-0.6
carbon source
M9+glycerol
+0.2
-0.1
N.D.
+0.0
-0.2
control
PDB
+0.3
+0.3
N.D.
+0.0
-0.6
carbon source
M9+polygalacturonate
+0.7
-0.3
N.D.
-0.1
-0.3
plant
Norland
+0.4
+0.2
N.D.
-0.1
-0.4
plant
Atlantic
+0.4
-0.2
N.D.
+0.4
-0.3
carbon source
M9+glycerol
+0.5
-0.2
N.D.
+0.1
-0.2
carbon source
M9+glycerol
+0.3
+0.1
N.D.
+0.3
-0.3
carbon source
M9+glycerol
+0.5
-0.2
N.D.
-0.0
+0.1
plant
Upstate
+0.3
+0.3
N.D.
+0.1
-0.1
carbon source
M9+glycerol
+0.3
-0.1
N.D.
-0.0
+0.4
plant
Upstate
+0.4
+0.1
N.D.
+0.3
-0.0
carbon source
M9+sucrose
+0.3
+0.1
N.D.
+0.1
+0.5
carbon source
M9+sucrose
+0.2
+0.4
N.D.
+0.6
+0.2
carbon source
M9+sucrose
+0.8
+0.4
N.D.
+0.2
+0.7
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