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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS01090 and HGI48_RS01095 are separated by 107 nucleotides
HGI48_RS01095 and HGI48_RS01100 are separated by 320 nucleotides
HGI48_RS01100 and HGI48_RS01105 are separated by 276 nucleotides
HGI48_RS01105 and HGI48_RS01110 are separated by 224 nucleotides
HGI48_RS01090: HGI48_RS01090 - DNA-directed RNA polymerase subunit beta, at 241,622 to 245,650
_RS01090
HGI48_RS01095: HGI48_RS01095 - DNA-directed RNA polymerase subunit beta', at 245,758 to 249,981
_RS01095
HGI48_RS01100: HGI48_RS01100 - DUF1176 domain-containing protein, at 250,302 to 251,399
_RS01100
HGI48_RS01105: HGI48_RS01105 - DUF1127 domain-containing protein, at 251,676 to 251,858
_RS01105
HGI48_RS01110: HGI48_RS01110 - DUF1127 domain-containing protein, at 252,083 to 252,268
_RS01110
Group
Condition
HGI48
_RS01090
HGI48
_RS01095
HGI48
_RS01100
HGI48
_RS01105
HGI48
_RS01110
plant
Atlantic
N.D.
N.D.
+0.3
-1.2
N.D.
plant
Atlantic
N.D.
N.D.
+1.0
-0.5
N.D.
plant
Atlantic
N.D.
N.D.
+0.9
-0.3
N.D.
plant
Norland
N.D.
N.D.
+1.5
-0.7
N.D.
plant
Upstate
N.D.
N.D.
+0.4
+0.6
N.D.
plant
Upstate
N.D.
N.D.
+0.5
+0.4
N.D.
plant
Upstate
N.D.
N.D.
+0.6
+0.4
N.D.
control
PDB
N.D.
N.D.
+1.3
-0.1
N.D.
plant
Upstate
N.D.
N.D.
+0.3
+1.0
N.D.
plant
Norland
N.D.
N.D.
+0.7
+0.8
N.D.
control
PDB
N.D.
N.D.
+1.4
+0.2
N.D.
carbon source
M9+glycerol
N.D.
N.D.
+2.2
-0.6
N.D.
control
PDB
N.D.
N.D.
+1.3
+0.3
N.D.
carbon source
M9+glycerol
N.D.
N.D.
+2.0
-0.4
N.D.
plant
Atlantic
N.D.
N.D.
+1.0
+0.6
N.D.
control
PDB
N.D.
N.D.
+1.2
+0.4
N.D.
plant
Atlantic
N.D.
N.D.
+0.4
+1.4
N.D.
control
PDB
N.D.
N.D.
+1.4
+0.5
N.D.
carbon source
M9+sucrose
N.D.
N.D.
+1.7
+0.3
N.D.
carbon source
M9+polygalacturonate
N.D.
N.D.
+1.8
+0.3
N.D.
carbon source
M9+sucrose
N.D.
N.D.
+1.9
+0.2
N.D.
plant
Norland
N.D.
N.D.
+1.3
+0.9
N.D.
carbon source
M9+glycerol
N.D.
N.D.
+2.6
-0.3
N.D.
carbon source
M9+polygalacturonate
N.D.
N.D.
+1.6
+0.8
N.D.
carbon source
M9+glycerol
N.D.
N.D.
+2.4
+0.0
N.D.
carbon source
M9+polygalacturonate
N.D.
N.D.
+2.8
-0.4
N.D.
control
PDB
N.D.
N.D.
+1.7
+0.9
N.D.
carbon source
M9+glycerol
N.D.
N.D.
+2.7
-0.0
N.D.
carbon source
M9+glycerol
N.D.
N.D.
+2.7
+0.0
N.D.
carbon source
M9+sucrose
N.D.
N.D.
+2.4
+0.7
N.D.
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