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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS00615 and HGI48_RS00620 overlap by 19 nucleotides
HGI48_RS00620 and HGI48_RS00625 are separated by 53 nucleotides
HGI48_RS00625 and HGI48_RS00630 are separated by 32 nucleotides
HGI48_RS00630 and HGI48_RS00635 are separated by 11 nucleotides
HGI48_RS00615: HGI48_RS00615 - HlyD family efflux transporter periplasmic adaptor subunit, at 146,114 to 147,376
_RS00615
HGI48_RS00620: HGI48_RS00620 - isoaspartyl peptidase/L-asparaginase, at 147,358 to 148,326
_RS00620
HGI48_RS00625: HGI48_RS00625 - M55 family metallopeptidase, at 148,380 to 149,201
_RS00625
HGI48_RS00630: HGI48_RS00630 - P1 family peptidase, at 149,234 to 150,289
_RS00630
HGI48_RS00635: HGI48_RS00635 - ABC transporter permease subunit, at 150,301 to 151,200
_RS00635
Group
Condition
HGI48
_RS00615
HGI48
_RS00620
HGI48
_RS00625
HGI48
_RS00630
HGI48
_RS00635
plant
Atlantic
+0.1
+0.4
-0.8
-1.4
-0.3
plant
Norland
-0.3
-0.5
-0.2
-0.5
-0.1
plant
Norland
-0.1
-0.8
-0.3
+0.1
-0.3
carbon source
M9+glycerol
-0.1
-1.3
+0.1
-0.0
-0.0
carbon source
M9+glycerol
-0.2
-0.5
-0.2
-0.6
+0.2
plant
Atlantic
-0.3
-1.1
+0.1
-0.1
+0.2
plant
Upstate
-0.1
-0.5
-0.3
-0.3
+0.1
carbon source
M9+glycerol
-0.3
-0.7
-0.2
-0.1
+0.2
plant
Norland
+0.1
-1.5
-0.0
+0.0
+0.3
plant
Upstate
-0.3
-0.2
-0.4
-0.2
+0.1
control
LB
-0.0
-0.5
+0.1
-0.6
-0.0
carbon source
M9+glycerol
+0.0
-0.1
-0.3
-0.6
-0.0
plant
Upstate
-0.2
-0.5
-0.2
-0.1
-0.0
control
PDB
-0.1
-0.6
-0.1
-0.1
+0.1
plant
Atlantic
-0.0
-0.2
-0.4
-0.2
+0.0
carbon source
M9+glycerol
-0.0
-0.3
-0.2
-0.3
+0.1
plant
Atlantic
-0.2
-0.1
-0.4
-0.0
+0.1
control
PDB
-0.1
+0.1
-0.3
-0.4
+0.1
plant
Norland
-0.2
-0.4
+0.2
+0.1
-0.1
plant
Atlantic
-0.0
-0.3
-0.1
+0.1
+0.2
carbon source
M9+glycerol
-0.2
-0.5
-0.2
+0.5
+0.1
control
PDB
-0.2
+0.0
-0.2
+0.3
-0.1
plant
Norland
+0.1
-0.6
+0.0
+0.2
+0.2
carbon source
M9+sucrose
-0.1
-0.1
+0.0
-0.3
+0.4
carbon source
M9+polygalacturonate
-0.0
-0.3
-0.1
+0.6
-0.2
control
PDB
-0.0
+0.2
-0.1
-0.3
+0.2
carbon source
M9+sucrose
-0.1
-0.2
-0.1
+1.0
+0.0
carbon source
M9+sucrose
+0.1
+0.5
+0.2
+0.1
+0.0
carbon source
M9+polygalacturonate
+0.2
+0.7
-0.3
+0.2
+0.2
plant
Atlantic
-0.2
+1.5
+0.1
+0.1
+0.2
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