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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS00600 and HGI48_RS00605 overlap by 8 nucleotides
HGI48_RS00605 and HGI48_RS00610 overlap by 8 nucleotides
HGI48_RS00610 and HGI48_RS00615 overlap by 8 nucleotides
HGI48_RS00615 and HGI48_RS00620 overlap by 19 nucleotides
HGI48_RS00600: HGI48_RS00600 - ABC transporter ATP-binding protein, at 142,721 to 143,434
_RS00600
HGI48_RS00605: HGI48_RS00605 - ABC transporter permease, at 143,427 to 144,647
_RS00605
HGI48_RS00610: HGI48_RS00610 - TolC family protein, at 144,640 to 146,121
_RS00610
HGI48_RS00615: HGI48_RS00615 - HlyD family efflux transporter periplasmic adaptor subunit, at 146,114 to 147,376
_RS00615
HGI48_RS00620: HGI48_RS00620 - isoaspartyl peptidase/L-asparaginase, at 147,358 to 148,326
_RS00620
Group
Condition
HGI48
_RS00600
HGI48
_RS00605
HGI48
_RS00610
HGI48
_RS00615
HGI48
_RS00620
carbon source
M9+glycerol
-0.6
-0.1
-0.1
-0.1
-1.3
carbon source
M9+glycerol
-0.9
-0.4
-0.1
+0.0
-0.1
plant
Atlantic
-0.1
-0.2
+0.1
-0.3
-1.1
plant
Norland
-0.4
-0.2
-0.1
-0.1
-0.6
plant
Norland
-0.5
-0.1
-0.2
+0.1
-0.6
plant
Norland
-0.2
+0.1
+0.2
+0.1
-1.5
control
PDB
-0.7
-0.1
-0.0
-0.1
-0.4
plant
Norland
-0.1
-0.3
-0.1
-0.3
-0.5
carbon source
M9+glycerol
-0.2
-0.0
+0.1
-0.3
-0.7
plant
Atlantic
-0.3
-0.3
-0.2
-0.0
-0.2
control
LB
-0.5
-0.2
-0.0
-0.1
-0.2
plant
Upstate
+0.1
-0.3
-0.1
-0.1
-0.5
control
PDB
-0.4
-0.0
+0.2
-0.1
-0.6
plant
Upstate
-0.3
-0.1
-0.1
-0.3
-0.2
carbon source
M9+glycerol
-0.1
-0.1
-0.0
-0.2
-0.5
plant
Norland
+0.2
-0.3
-0.1
-0.2
-0.4
control
LB
-0.1
-0.1
+0.0
-0.0
-0.5
carbon source
M9+sucrose
-0.4
+0.1
-0.1
-0.1
-0.1
plant
Norland
+0.3
+0.1
-0.0
-0.1
-0.8
plant
Upstate
+0.3
-0.1
-0.0
-0.2
-0.5
plant
Atlantic
-0.2
+0.3
-0.0
-0.0
-0.3
plant
Atlantic
-0.3
+0.2
+0.1
-0.2
-0.1
carbon source
M9+glycerol
-0.0
+0.3
+0.1
-0.2
-0.5
carbon source
M9+polygalacturonate
-0.4
+0.3
+0.1
-0.0
-0.3
control
LB
-0.3
-0.1
+0.0
-0.1
+0.3
carbon source
M9+sucrose
-0.3
-0.2
-0.1
+0.1
+0.5
plant
Atlantic
-0.0
+0.1
-0.2
+0.1
+0.4
plant
Atlantic
-0.2
-0.2
-0.1
-0.2
+1.5
control
PDB
+0.7
-0.1
+0.0
-0.0
+0.2
carbon source
M9+polygalacturonate
+0.2
+0.1
+0.2
+0.2
+0.7
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