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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS00535 and HGI48_RS00540 are separated by 167 nucleotides
HGI48_RS00540 and HGI48_RS00545 are separated by 129 nucleotides
HGI48_RS00545 and HGI48_RS00550 are separated by 127 nucleotides
HGI48_RS00550 and HGI48_RS00555 are separated by 200 nucleotides
HGI48_RS00535: HGI48_RS00535 - helix-turn-helix transcriptional regulator, at 128,885 to 129,238
_RS00535
HGI48_RS00540: HGI48_RS00540 - YicC family protein, at 129,406 to 130,269
_RS00540
HGI48_RS00545: HGI48_RS00545 - LysR family transcriptional regulator, at 130,399 to 131,307
_RS00545
HGI48_RS00550: HGI48_RS00550 - dipeptidase, at 131,435 to 132,517
_RS00550
HGI48_RS00555: HGI48_RS00555 - ABC transporter substrate-binding protein, at 132,718 to 134,313
_RS00555
Group
Condition
HGI48
_RS00535
HGI48
_RS00540
HGI48
_RS00545
HGI48
_RS00550
HGI48
_RS00555
plant
Atlantic
-0.9
-0.5
-0.3
+0.6
-0.4
plant
Atlantic
-0.1
-0.7
-0.3
-0.2
+0.2
plant
Atlantic
-0.4
+0.1
-0.2
-0.1
+0.1
plant
Upstate
+0.0
-0.8
+0.2
+0.1
+0.1
plant
Norland
+0.0
-0.3
-0.2
-0.0
+0.3
plant
Upstate
+0.2
+0.2
-0.3
-0.2
+0.0
plant
Atlantic
-0.2
+0.2
-0.1
-0.1
+0.2
carbon source
M9+glycerol
-0.1
+0.5
+0.1
-0.5
+0.1
control
LB
-0.4
+0.1
+0.1
+0.3
+0.0
plant
Upstate
-0.1
+0.4
-0.2
+0.1
+0.0
control
PDB
-0.3
+0.6
+0.1
-0.2
+0.2
control
PDB
-0.1
+0.8
+0.0
+0.1
-0.1
carbon source
M9+glycerol
+0.1
+0.7
-0.0
+0.0
-0.1
carbon source
M9+polygalacturonate
+0.0
+1.1
-0.7
+0.1
+0.3
plant
Norland
+0.6
+0.2
-0.4
-0.1
+0.3
carbon source
M9+glycerol
-0.3
+0.8
+0.0
+0.2
+0.1
plant
Norland
+0.2
+0.3
-0.1
+0.1
+0.2
control
PDB
-0.1
+1.1
+0.2
-0.2
-0.0
carbon source
M9+glycerol
+0.1
+0.8
+0.3
-0.1
-0.3
control
PDB
+0.2
+0.7
+0.2
-0.2
+0.1
carbon source
M9+glycerol
-0.2
+0.6
-0.3
+0.6
+0.3
control
PDB
-0.1
+1.0
+0.1
-0.0
+0.1
carbon source
M9+glycerol
+0.2
+0.7
+0.2
-0.2
+0.2
plant
Atlantic
+0.5
+0.5
-0.4
+0.4
+0.2
plant
Atlantic
+0.4
+0.4
+0.2
+0.2
+0.4
carbon source
M9+sucrose
-0.0
+1.8
-0.3
-0.2
+0.4
carbon source
M9+polygalacturonate
-0.3
+1.7
+0.0
+0.4
-0.0
carbon source
M9+polygalacturonate
-0.5
+2.1
-0.0
+0.3
+0.0
carbon source
M9+sucrose
-0.2
+2.1
-0.1
+0.1
+0.2
carbon source
M9+sucrose
-0.1
+2.5
-0.2
+0.9
+0.1
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