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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS00430 and HGI48_RS00435 overlap by 44 nucleotides
HGI48_RS00435 and HGI48_RS00440 overlap by 13 nucleotides
HGI48_RS00440 and HGI48_RS00445 are separated by 281 nucleotides
HGI48_RS00445 and HGI48_RS00450 are separated by 55 nucleotides
HGI48_RS00430: HGI48_RS00430 - two-component system sensor histidine kinase VfmI, at 108,922 to 110,241
_RS00430
HGI48_RS00435: HGI48_RS00435 - 4'-phosphopantetheinyl transferase superfamily protein, at 110,198 to 110,968
_RS00435
HGI48_RS00440: HGI48_RS00440 - DUF2807 domain-containing protein, at 110,956 to 111,603
_RS00440
HGI48_RS00445: HGI48_RS00445 - 3-oxoacyl-ACP synthase, at 111,885 to 112,823
_RS00445
HGI48_RS00450: HGI48_RS00450 - hypothetical protein, at 112,879 to 113,676
_RS00450
Group
Condition
HGI48
_RS00430
HGI48
_RS00435
HGI48
_RS00440
HGI48
_RS00445
HGI48
_RS00450
plant
Atlantic
+0.5
-0.0
-0.8
-0.2
-0.3
carbon source
M9+glycerol
+0.2
-0.1
-0.4
-0.2
-0.3
carbon source
M9+glycerol
+0.4
-0.1
-0.6
+0.0
-0.3
carbon source
M9+glycerol
+0.2
-0.4
-0.4
-0.1
+0.2
control
LB
+0.1
-0.1
-0.4
-0.2
+0.2
plant
Atlantic
+0.5
-0.4
-0.3
-0.1
-0.0
carbon source
M9+polygalacturonate
+0.1
+0.4
-0.8
+0.0
+0.0
carbon source
M9+glycerol
+0.3
-0.5
+0.1
+0.2
-0.3
carbon source
M9+glycerol
+0.2
+0.2
+0.1
-0.0
-0.6
plant
Upstate
+0.5
-0.3
+0.2
-0.3
-0.2
plant
Norland
+0.3
+0.2
-0.4
-0.3
+0.1
plant
Upstate
+0.4
-0.0
-0.7
+0.1
+0.1
carbon source
M9+glycerol
+0.5
-0.0
-0.3
-0.1
-0.1
plant
Norland
+0.6
-0.1
-0.3
+0.0
-0.1
carbon source
M9+sucrose
+0.3
+0.5
-1.2
+0.4
+0.1
plant
Norland
+0.6
-0.5
+0.1
+0.1
-0.1
plant
Norland
+0.6
+0.3
-0.5
+0.0
+0.1
carbon source
M9+sucrose
+0.2
+0.5
-0.2
+0.1
-0.1
plant
Upstate
+0.4
-0.1
+0.1
+0.2
+0.1
control
PDB
+1.7
-0.2
-0.4
-0.2
+0.1
plant
Norland
+0.5
+0.1
+0.2
-0.1
+0.2
plant
Atlantic
+0.2
-0.2
+0.7
-0.3
+0.6
carbon source
M9+sucrose
+0.3
+0.5
+0.0
+0.4
-0.1
control
PDB
+1.6
-0.3
-0.1
-0.0
+0.0
plant
Atlantic
+0.4
+0.5
+0.5
-0.2
+0.3
plant
Atlantic
+0.5
-0.2
+0.7
+0.1
+0.5
control
PDB
+1.4
-0.1
+0.1
-0.0
+0.3
control
PDB
+1.7
+0.1
-0.0
+0.0
-0.1
control
PDB
+1.6
+0.1
+0.1
-0.0
+0.3
control
PDB
+1.5
+0.1
+0.3
+0.0
+0.3
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