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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS00400 and HGI48_RS00405 overlap by 14 nucleotides
HGI48_RS00405 and HGI48_RS00410 are separated by 61 nucleotides
HGI48_RS00410 and HGI48_RS00415 are separated by 647 nucleotides
HGI48_RS00415 and HGI48_RS00420 are separated by 4 nucleotides
HGI48_RS00400: HGI48_RS00400 - multidrug transporter, at 101,698 to 101,883
_RS00400
HGI48_RS00405: HGI48_RS00405 - alpha/beta hydrolase, at 101,870 to 102,958
_RS00405
HGI48_RS00410: HGI48_RS00410 - AraC family transcriptional regulator VfmE, at 103,020 to 103,583
_RS00410
HGI48_RS00415: HGI48_RS00415 - ABC transporter ATP-binding protein, at 104,231 to 104,938
_RS00415
HGI48_RS00420: HGI48_RS00420 - ABC transporter permease, at 104,943 to 107,378
_RS00420
Group
Condition
HGI48
_RS00400
HGI48
_RS00405
HGI48
_RS00410
HGI48
_RS00415
HGI48
_RS00420
control
LB
N.D.
+0.1
+0.1
-0.2
-0.5
control
LB
N.D.
+0.0
-0.0
+0.2
-0.6
control
LB
N.D.
+0.0
+0.0
+0.3
-0.7
plant
Atlantic
N.D.
-0.1
+0.1
+0.4
-0.5
plant
Upstate
N.D.
+0.0
+0.2
+0.4
-0.2
plant
Norland
N.D.
-0.1
+0.3
+0.5
-0.2
plant
Atlantic
N.D.
-0.1
+0.6
+0.6
-0.6
plant
Upstate
N.D.
+0.3
+0.3
+0.3
-0.2
plant
Norland
N.D.
+0.0
+0.4
+0.4
-0.2
carbon source
M9+polygalacturonate
N.D.
-0.3
+0.0
-0.0
+1.1
carbon source
M9+glycerol
N.D.
+0.1
+0.2
+0.1
+0.5
plant
Norland
N.D.
+0.1
+0.3
+0.7
-0.2
plant
Atlantic
N.D.
+0.0
+0.4
+0.4
+0.1
plant
Atlantic
N.D.
+0.2
+0.4
+0.7
-0.4
plant
Atlantic
N.D.
+0.1
+0.5
+0.7
-0.1
carbon source
M9+sucrose
N.D.
+0.1
+0.0
+0.5
+0.4
plant
Upstate
N.D.
+0.1
+0.5
+0.8
-0.2
plant
Upstate
N.D.
+0.1
+0.3
+0.6
+0.1
carbon source
M9+glycerol
N.D.
-0.0
+0.3
+0.4
+0.5
plant
Norland
N.D.
+0.2
+0.8
+0.3
-0.2
plant
Norland
N.D.
+0.2
+0.6
+0.5
+0.1
carbon source
M9+polygalacturonate
N.D.
+0.0
+0.3
+0.2
+1.1
carbon source
M9+polygalacturonate
N.D.
-0.3
+0.1
+0.2
+1.9
carbon source
M9+sucrose
N.D.
-0.3
+0.3
+0.7
+1.4
control
PDB
N.D.
-0.2
+1.5
+1.3
+0.9
control
PDB
N.D.
-0.0
+1.7
+1.3
+0.8
control
PDB
N.D.
-0.3
+1.7
+1.5
+0.9
control
PDB
N.D.
-0.3
+1.6
+1.6
+1.0
control
PDB
N.D.
-0.0
+1.5
+1.8
+0.9
control
PDB
N.D.
-0.1
+1.8
+1.6
+0.9
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