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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS00345 and HGI48_RS00350 overlap by 6 nucleotides
HGI48_RS00350 and HGI48_RS00355 are separated by 119 nucleotides
HGI48_RS00355 and HGI48_RS00360 are separated by 96 nucleotides
HGI48_RS00360 and HGI48_RS00365 are separated by 358 nucleotides
HGI48_RS00345: HGI48_RS00345 - nickel/cobalt efflux protein RcnA, at 88,219 to 89,160
_RS00345
HGI48_RS00350: HGI48_RS00350 - hypothetical protein, at 89,155 to 89,355
_RS00350
HGI48_RS00355: HGI48_RS00355 - argininosuccinate synthase, at 89,475 to 90,824
_RS00355
HGI48_RS00360: HGI48_RS00360 - MarR family transcriptional regulator, at 90,921 to 91,421
_RS00360
HGI48_RS00365: HGI48_RS00365 - DMT family transporter, at 91,780 to 92,673
_RS00365
Group
Condition
HGI48
_RS00345
HGI48
_RS00350
HGI48
_RS00355
HGI48
_RS00360
HGI48
_RS00365
carbon source
M9+polygalacturonate
-0.2
N.D.
-2.9
-1.7
-0.2
carbon source
M9+sucrose
+0.1
N.D.
-3.2
-1.2
-0.1
carbon source
M9+polygalacturonate
-0.5
N.D.
-2.3
-1.5
-0.2
carbon source
M9+sucrose
-0.2
N.D.
-2.7
-1.2
+0.2
carbon source
M9+polygalacturonate
-0.7
N.D.
-1.7
-0.9
-0.4
carbon source
M9+sucrose
+0.2
N.D.
-2.8
-0.7
+0.0
carbon source
M9+glycerol
-0.0
N.D.
-1.6
+0.3
-0.5
control
LB
-0.1
N.D.
+0.1
-1.7
-0.1
plant
Atlantic
-0.2
N.D.
+0.1
-1.2
-0.3
plant
Norland
-0.2
N.D.
-0.1
-0.6
-0.6
carbon source
M9+glycerol
-0.4
N.D.
-1.6
+0.7
+0.2
carbon source
M9+glycerol
+0.2
N.D.
-2.2
+0.6
+0.3
carbon source
M9+glycerol
+0.2
N.D.
-1.7
+1.0
-0.3
carbon source
M9+glycerol
+0.1
N.D.
-1.5
+1.3
-0.3
carbon source
M9+glycerol
+0.2
N.D.
-1.7
+1.2
+0.0
plant
Upstate
+0.0
N.D.
+0.2
+0.1
-0.6
plant
Atlantic
+0.5
N.D.
+0.1
-0.6
-0.1
plant
Upstate
+0.3
N.D.
-0.0
+0.2
-0.6
control
PDB
-0.3
N.D.
+0.3
+0.2
-0.3
plant
Atlantic
-0.1
N.D.
+0.0
+0.5
-0.4
plant
Norland
+0.1
N.D.
+0.0
+0.5
-0.6
plant
Norland
+0.1
N.D.
+0.1
+0.4
-0.4
plant
Norland
-0.4
N.D.
-0.0
+0.5
+0.1
plant
Atlantic
-0.9
N.D.
+0.3
+1.3
-0.5
control
PDB
-0.6
N.D.
+0.2
+0.8
-0.2
control
LB
+0.3
N.D.
+0.0
+0.3
-0.3
plant
Upstate
+0.3
N.D.
+0.2
+0.4
-0.3
control
PDB
-0.1
N.D.
+0.5
+0.3
+0.2
plant
Atlantic
+0.6
N.D.
+0.1
+0.2
+0.2
control
PDB
+0.2
N.D.
+0.2
+0.6
+0.2
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