Fitness for 5 genes in Dickeya dianthicola 67-19

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500 ntHGI48_RS00335 and HGI48_RS00340 are separated by 166 nucleotidesHGI48_RS00340 and HGI48_RS00345 are separated by 99 nucleotidesHGI48_RS00345 and HGI48_RS00350 overlap by 6 nucleotidesHGI48_RS00350 and HGI48_RS00355 are separated by 119 nucleotides HGI48_RS00335: HGI48_RS00335 - DJ-1/PfpI family protein, at 87,099 to 87,674 _RS00335 HGI48_RS00340: HGI48_RS00340 - metal/formaldehyde-sensitive transcriptional repressor, at 87,841 to 88,119 _RS00340 HGI48_RS00345: HGI48_RS00345 - nickel/cobalt efflux protein RcnA, at 88,219 to 89,160 _RS00345 HGI48_RS00350: HGI48_RS00350 - hypothetical protein, at 89,155 to 89,355 _RS00350 HGI48_RS00355: HGI48_RS00355 - argininosuccinate synthase, at 89,475 to 90,824 _RS00355
Group Condition HGI48_RS00335 HGI48_RS00340 HGI48_RS00345 HGI48_RS00350 HGI48_RS00355
carbon source M9+sucrose -0.2 N.D. -0.2 N.D. -2.7
carbon source M9+sucrose -0.0 N.D. +0.1 N.D. -3.2
carbon source M9+polygalacturonate +0.1 N.D. -0.2 N.D. -2.9
carbon source M9+polygalacturonate +0.1 N.D. -0.5 N.D. -2.3
carbon source M9+sucrose +0.2 N.D. +0.2 N.D. -2.8
carbon source M9+polygalacturonate +0.1 N.D. -0.7 N.D. -1.7
carbon source M9+glycerol -0.1 N.D. +0.2 N.D. -2.2
carbon source M9+glycerol +0.2 N.D. -0.4 N.D. -1.6
carbon source M9+glycerol -0.2 N.D. -0.0 N.D. -1.6
carbon source M9+glycerol -0.3 N.D. +0.2 N.D. -1.7
carbon source M9+glycerol -0.2 N.D. +0.2 N.D. -1.7
carbon source M9+glycerol -0.2 N.D. +0.1 N.D. -1.5
plant Atlantic -0.4 N.D. -0.9 N.D. +0.3
control PDB -0.1 N.D. -0.6 N.D. +0.2
plant Norland -0.1 N.D. -0.2 N.D. -0.1
plant Norland +0.1 N.D. -0.4 N.D. -0.0
control PDB -0.4 N.D. -0.3 N.D. +0.3
plant Atlantic -0.3 N.D. -0.1 N.D. +0.0
plant Upstate -0.2 N.D. +0.1 N.D. -0.2
plant Norland -0.3 N.D. +0.1 N.D. +0.1
plant Norland -0.2 N.D. +0.2 N.D. -0.0
plant Atlantic -0.1 N.D. -0.0 N.D. +0.2
control LB -0.3 N.D. +0.3 N.D. +0.0
control PDB -0.2 N.D. -0.1 N.D. +0.5
control PDB -0.2 N.D. +0.2 N.D. +0.2
plant Upstate +0.1 N.D. +0.3 N.D. -0.0
control PDB -0.1 N.D. +0.3 N.D. +0.3
plant Atlantic -0.3 N.D. +0.6 N.D. +0.1
plant Upstate +0.1 N.D. +0.3 N.D. +0.2
plant Atlantic +0.2 N.D. +0.5 N.D. +0.1
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