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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS00170 and HGI48_RS00175 are separated by 101 nucleotides
HGI48_RS00175 and HGI48_RS00180 are separated by 656 nucleotides
HGI48_RS00180 and HGI48_RS00185 overlap by 4 nucleotides
HGI48_RS00185 and HGI48_RS00190 overlap by 4 nucleotides
HGI48_RS00170: HGI48_RS00170 - aldose 1-epimerase family protein, at 43,899 to 45,107
_RS00170
HGI48_RS00175: HGI48_RS00175 - glyoxylate/hydroxypyruvate reductase GhrB, at 45,209 to 46,171
_RS00175
HGI48_RS00180: HGI48_RS00180 - RNA-directed DNA polymerase, at 46,828 to 47,766
_RS00180
HGI48_RS00185: HGI48_RS00185 - AAA family ATPase, at 47,763 to 49,421
_RS00185
HGI48_RS00190: HGI48_RS00190 - TIGR02646 family protein, at 49,418 to 50,065
_RS00190
Group
Condition
HGI48
_RS00170
HGI48
_RS00175
HGI48
_RS00180
HGI48
_RS00185
HGI48
_RS00190
carbon source
M9+sucrose
-0.1
+0.1
-0.2
-0.1
-0.5
plant
Norland
-0.1
-0.3
-0.1
-0.1
-0.2
carbon source
M9+glycerol
-0.4
-0.1
-0.0
-0.1
-0.3
carbon source
M9+sucrose
+0.0
-0.2
-0.1
-0.4
-0.1
control
LB
-0.3
+0.1
-0.1
-0.2
-0.3
control
LB
+0.1
-0.1
-0.2
-0.1
-0.4
control
PDB
+0.0
-0.3
+0.0
+0.0
-0.4
plant
Atlantic
+0.1
-0.2
+0.1
-0.0
-0.4
control
PDB
-0.2
-0.2
+0.2
+0.0
-0.3
carbon source
M9+polygalacturonate
+0.1
-0.2
+0.0
-0.5
+0.1
carbon source
M9+polygalacturonate
+0.0
-0.4
+0.0
-0.3
+0.2
carbon source
M9+sucrose
-0.1
-0.0
-0.1
-0.2
+0.1
carbon source
M9+glycerol
+0.0
-0.4
+0.3
+0.0
-0.3
plant
Atlantic
-0.3
+0.3
-0.0
-0.1
-0.2
plant
Norland
-0.2
+0.2
-0.0
+0.1
-0.3
carbon source
M9+glycerol
-0.1
-0.1
+0.2
-0.1
-0.1
plant
Atlantic
+0.4
+0.2
-0.4
+0.0
-0.4
plant
Upstate
-0.0
-0.3
-0.2
+0.4
-0.0
control
PDB
+0.1
-0.1
+0.1
-0.3
+0.1
plant
Upstate
+0.1
+0.1
+0.2
-0.4
+0.1
plant
Norland
-0.2
-0.1
-0.2
+0.3
+0.3
plant
Upstate
-0.0
-0.2
-0.1
+0.1
+0.3
carbon source
M9+polygalacturonate
+0.1
-0.2
+0.2
-0.2
+0.2
carbon source
M9+glycerol
-0.0
-0.1
+0.4
+0.2
-0.3
plant
Upstate
+0.2
-0.1
-0.1
+0.3
-0.1
plant
Upstate
-0.1
+0.2
-0.1
+0.2
+0.1
plant
Norland
+0.1
+0.2
-0.0
-0.2
+0.1
carbon source
M9+glycerol
+0.1
+0.1
+0.1
+0.2
-0.3
control
PDB
+0.2
+0.2
+0.1
+0.1
-0.2
plant
Atlantic
+0.8
+0.3
+0.1
-0.1
-0.1
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