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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS00125 and HGI48_RS00130 are separated by 140 nucleotides
HGI48_RS00130 and HGI48_RS00135 are separated by 92 nucleotides
HGI48_RS00135 and HGI48_RS00140 overlap by 4 nucleotides
HGI48_RS00140 and HGI48_RS00145 are separated by 29 nucleotides
HGI48_RS00125: HGI48_RS00125 - DUF3861 domain-containing protein, at 33,103 to 33,393
_RS00125
HGI48_RS00130: HGI48_RS00130 - glucokinase, at 33,534 to 34,502
_RS00130
HGI48_RS00135: HGI48_RS00135 - alkylhydroperoxidase domain protein, at 34,595 to 35,713
_RS00135
HGI48_RS00140: HGI48_RS00140 - putative FMN-dependent luciferase-like monooxygenase, at 35,710 to 36,750
_RS00140
HGI48_RS00145: HGI48_RS00145 - ABC transporter ATP-binding protein, at 36,780 to 38,477
_RS00145
Group
Condition
HGI48
_RS00125
HGI48
_RS00130
HGI48
_RS00135
HGI48
_RS00140
HGI48
_RS00145
carbon source
M9+polygalacturonate
-0.7
+0.1
+0.2
-1.1
-0.0
control
PDB
+0.1
-0.7
-0.2
-0.1
-0.2
control
LB
-0.6
-0.2
-0.3
+0.2
-0.1
carbon source
M9+sucrose
-0.8
-0.3
-0.2
-0.1
+0.3
plant
Atlantic
-0.4
-0.4
-0.4
+0.2
-0.0
control
PDB
-0.7
-0.2
+0.0
-0.2
+0.1
plant
Norland
-1.3
+0.1
+0.1
+0.3
-0.2
plant
Atlantic
-0.4
+0.1
+0.2
-0.3
-0.2
carbon source
M9+glycerol
+0.0
-0.6
-0.5
+0.3
+0.3
plant
Norland
-0.5
-0.0
-0.3
+0.3
+0.0
control
LB
+0.2
+0.2
-0.2
-0.2
-0.4
control
PDB
-0.2
-0.5
-0.1
+0.6
-0.2
plant
Upstate
-0.9
-0.1
-0.1
+0.9
+0.0
carbon source
M9+glycerol
+0.3
-0.6
-0.4
+0.2
+0.3
plant
Atlantic
+0.1
-0.3
-0.9
+0.7
+0.2
control
PDB
-0.8
+0.0
-0.1
+0.7
+0.0
plant
Upstate
+0.1
-0.4
-0.3
+0.8
-0.2
carbon source
M9+glycerol
-0.1
-0.3
+0.2
+0.1
+0.3
carbon source
M9+glycerol
-0.7
-0.2
+0.2
+0.8
+0.3
carbon source
M9+glycerol
+0.6
-0.1
+0.1
-0.4
+0.3
plant
Upstate
-0.2
-0.4
+0.4
+0.3
+0.5
plant
Norland
-0.0
-0.3
-0.1
+1.0
-0.0
control
PDB
-0.9
-0.1
+0.4
+1.2
-0.0
plant
Upstate
-0.2
+0.2
+0.0
+1.1
-0.1
control
PDB
-0.2
-0.3
+0.0
+1.3
+0.2
carbon source
M9+polygalacturonate
+0.3
+0.2
-0.2
+0.2
+0.6
plant
Atlantic
+0.2
+0.2
+0.1
+0.8
-0.0
carbon source
M9+sucrose
+0.6
+0.5
+0.0
+0.3
-0.1
plant
Atlantic
+0.2
-0.1
-0.0
+1.4
+0.0
plant
Upstate
+0.3
+0.1
+0.5
+1.2
-0.4
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