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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS00095 and HGI48_RS00100 are separated by 5 nucleotides
HGI48_RS00100 and HGI48_RS00105 are separated by 38 nucleotides
HGI48_RS00105 and HGI48_RS00110 are separated by 53 nucleotides
HGI48_RS00110 and HGI48_RS00115 are separated by 590 nucleotides
HGI48_RS00095: HGI48_RS00095 - PAS domain-containing protein, at 25,560 to 25,997
_RS00095
HGI48_RS00100: HGI48_RS00100 - formyl-CoA transferase, at 26,003 to 27,280
_RS00100
HGI48_RS00105: HGI48_RS00105 - oxalyl-CoA decarboxylase, at 27,319 to 29,064
_RS00105
HGI48_RS00110: HGI48_RS00110 - OFA family MFS transporter, at 29,118 to 30,425
_RS00110
HGI48_RS00115: HGI48_RS00115 - LysR family transcriptional regulator, at 31,016 to 31,912
_RS00115
Group
Condition
HGI48
_RS00095
HGI48
_RS00100
HGI48
_RS00105
HGI48
_RS00110
HGI48
_RS00115
carbon source
M9+polygalacturonate
-3.7
+0.0
-0.1
-0.1
-0.2
plant
Atlantic
-3.4
+0.3
+0.4
+0.4
-0.1
carbon source
M9+glycerol
-1.9
+0.2
-0.3
+0.1
-0.4
carbon source
M9+polygalacturonate
-1.1
-0.1
-0.2
+0.0
-0.4
control
LB
-1.5
+0.1
-0.1
+0.1
-0.0
plant
Norland
-0.8
+0.1
+0.0
-0.3
-0.4
plant
Upstate
-1.3
+0.1
-0.0
-0.1
-0.1
control
PDB
-0.5
+0.0
-0.0
-0.6
-0.2
control
LB
-0.7
-0.0
-0.0
-0.2
-0.3
plant
Atlantic
-0.7
+0.0
-0.1
+0.0
-0.4
carbon source
M9+glycerol
-0.1
-0.0
-0.2
-0.3
-0.4
control
PDB
-0.9
+0.0
+0.2
-0.1
-0.2
carbon source
M9+polygalacturonate
-0.4
-0.1
-0.1
-0.2
-0.0
plant
Upstate
-0.9
-0.0
-0.1
+0.1
+0.1
control
LB
-0.7
+0.1
-0.0
+0.0
-0.1
plant
Norland
-0.6
-0.1
-0.1
+0.1
-0.1
carbon source
M9+glycerol
-1.0
-0.0
+0.2
-0.0
+0.1
control
PDB
-0.3
+0.0
+0.1
-0.3
-0.3
control
PDB
-0.1
+0.0
+0.1
-0.5
-0.2
plant
Norland
-1.0
+0.1
-0.1
+0.2
+0.2
plant
Upstate
-0.4
+0.2
-0.0
-0.1
-0.2
plant
Atlantic
+0.3
-0.1
+0.1
-0.5
-0.2
control
LB
-0.4
-0.1
+0.1
-0.1
+0.1
carbon source
M9+sucrose
+0.3
+0.1
-0.2
-0.5
+0.1
plant
Atlantic
+0.2
-0.1
-0.2
+0.3
-0.1
carbon source
M9+glycerol
+0.7
+0.1
-0.4
-0.2
-0.0
plant
Atlantic
+0.1
+0.1
+0.3
+0.2
-0.4
plant
Norland
+0.4
-0.0
+0.2
-0.1
-0.1
carbon source
M9+sucrose
+0.9
-0.1
-0.0
-0.2
-0.1
plant
Norland
+0.7
+0.1
+0.1
-0.0
-0.1
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