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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS21540 and HER17_RS21545 are separated by 7 nucleotides
HER17_RS21545 and HER17_RS21550 are separated by 7 nucleotides
HER17_RS21550 and HER17_RS21555 are separated by 204 nucleotides
HER17_RS21555 and HER17_RS21560 are separated by 259 nucleotides
HER17_RS21540: HER17_RS21540 - ribose ABC transporter permease, at 4,827,284 to 4,828,252
_RS21540
HER17_RS21545: HER17_RS21545 - ribose ABC transporter ATP-binding protein RbsA, at 4,828,260 to 4,829,765
_RS21545
HER17_RS21550: HER17_RS21550 - D-ribose pyranase, at 4,829,773 to 4,830,192
_RS21550
HER17_RS21555: HER17_RS21555 - YgiW/YdeI family stress tolerance OB fold protein, at 4,830,397 to 4,830,792
_RS21555
HER17_RS21560: HER17_RS21560 - response regulator, at 4,831,052 to 4,831,714
_RS21560
Group
Condition
HER17
_RS21540
HER17
_RS21545
HER17
_RS21550
HER17
_RS21555
HER17
_RS21560
carbon source
M9+glucose+arginine
-0.1
-0.1
-0.6
-0.2
-0.2
carbon source
M9+glucose+arginine
-0.3
-0.1
-0.2
-0.4
-0.3
carbon source
M9+glucose
-0.3
-0.2
-0.5
-0.1
+0.0
carbon source
M9+glycerol
-0.2
+0.0
-0.6
-0.1
-0.1
carbon source
M9+glucose
-0.1
-0.1
-0.3
-0.4
-0.1
plant
Tuber-Atlantic
-0.2
-0.3
-0.6
-0.0
+0.1
carbon source
M9+polygalacturonate
-0.1
-0.1
-0.2
-0.3
-0.1
carbon source
M9+glycerol
-0.1
-0.1
-0.1
-0.3
-0.0
carbon source
M9+glycerol
-0.1
-0.0
-0.4
-0.2
+0.1
carbon source
M9+glucose+arginine
-0.2
-0.3
+0.0
+0.0
-0.1
carbon source
M9+glycerol
-0.1
-0.1
-0.1
-0.2
-0.0
carbon source
M9+glucose
-0.3
-0.2
+0.1
-0.0
-0.1
carbon source
M9+starch
-0.0
-0.1
-0.4
+0.1
-0.1
carbon source
M9+glycerol
-0.1
-0.2
-0.2
+0.1
-0.1
carbon source
M9+sucrose
-0.1
-0.1
-0.0
-0.3
+0.0
control
LB
-0.1
-0.1
-0.0
-0.2
-0.0
carbon source
M9+sucrose
-0.1
-0.1
-0.2
-0.1
+0.1
carbon source
M9+polygalacturonate
-0.0
-0.0
-0.2
-0.1
-0.1
control
LB
-0.1
-0.2
+0.0
-0.2
+0.1
carbon source
M9+starch
-0.1
-0.1
+0.2
-0.4
-0.0
control
LB
-0.1
-0.0
-0.2
-0.1
+0.1
carbon source
M9+sucrose
-0.1
-0.0
-0.1
+0.0
-0.1
control
LB
+0.0
-0.1
+0.2
-0.3
-0.1
carbon source
M9+polygalacturonate
-0.1
-0.0
+0.0
-0.1
-0.1
control
LB
-0.2
-0.1
-0.2
+0.2
+0.1
plant
Tuber-Atlantic
+0.0
-0.2
-0.5
+0.3
+0.1
plant
Tuber-Atlantic
+0.2
-0.0
-0.3
-0.1
+0.1
plant
Tuber-Atlantic
-0.2
-0.1
+0.1
+0.0
-0.0
carbon source
M9+glycerol
-0.1
-0.2
+0.0
+0.1
+0.1
carbon source
M9+starch
-0.1
+0.1
+0.1
-0.0
-0.1
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HER17_RS21550
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