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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS21400 and HER17_RS21405 are separated by 157 nucleotides
HER17_RS21405 and HER17_RS21410 are separated by 195 nucleotides
HER17_RS21410 and HER17_RS21415 are separated by 138 nucleotides
HER17_RS21415 and HER17_RS21420 are separated by 64 nucleotides
HER17_RS21400: HER17_RS21400 - uracil-xanthine permease family protein, at 4,796,473 to 4,797,861
_RS21400
HER17_RS21405: HER17_RS21405 - AsmA family protein, at 4,798,019 to 4,799,710
_RS21405
HER17_RS21410: HER17_RS21410 - fatty acid biosynthesis protein FabY, at 4,799,906 to 4,800,847
_RS21410
HER17_RS21415: HER17_RS21415 - D-aminoacyl-tRNA deacylase, at 4,800,986 to 4,801,423
_RS21415
HER17_RS21420: HER17_RS21420 - glucose-1-phosphatase, at 4,801,488 to 4,802,099
_RS21420
Group
Condition
HER17
_RS21400
HER17
_RS21405
HER17
_RS21410
HER17
_RS21415
HER17
_RS21420
carbon source
M9+glucose+arginine
-0.1
-0.0
-1.0
-0.6
-0.5
carbon source
M9+glucose+arginine
-0.3
-0.2
-0.9
-0.3
-0.4
carbon source
M9+glucose
-0.1
-0.1
-0.5
-0.4
-0.2
carbon source
M9+glucose+arginine
+0.2
-0.3
-0.5
-0.2
-0.3
carbon source
M9+sucrose
-0.1
-0.2
-0.1
-0.3
-0.2
carbon source
M9+glucose
+0.0
-0.1
-0.7
-0.3
+0.1
carbon source
M9+sucrose
-0.0
-0.1
-0.2
-0.4
-0.2
plant
Tuber-Atlantic
+0.1
+0.1
-0.2
-0.5
-0.2
carbon source
M9+starch
+0.1
-0.1
+0.0
-0.5
-0.1
carbon source
M9+polygalacturonate
-0.0
+0.0
-0.0
-0.5
-0.1
carbon source
M9+polygalacturonate
-0.1
+0.1
-0.1
-0.4
-0.0
carbon source
M9+starch
-0.0
-0.3
+0.1
-0.2
-0.1
carbon source
M9+sucrose
-0.0
-0.2
+0.1
-0.0
-0.3
carbon source
M9+glucose
-0.1
-0.2
-0.5
+0.4
+0.0
carbon source
M9+polygalacturonate
+0.0
-0.0
-0.2
-0.0
-0.1
carbon source
M9+starch
+0.0
-0.0
+0.1
-0.2
-0.2
carbon source
M9+glycerol
-0.1
-0.0
-0.2
+0.0
+0.0
control
LB
-0.0
-0.1
-0.0
-0.2
-0.0
control
LB
+0.0
-0.2
+0.1
+0.1
-0.2
control
LB
+0.0
-0.0
+0.1
-0.2
-0.1
control
LB
+0.1
+0.0
+0.0
-0.2
-0.0
control
LB
-0.0
-0.0
+0.3
-0.1
-0.2
carbon source
M9+glycerol
-0.1
+0.1
-0.1
+0.2
-0.1
carbon source
M9+glycerol
-0.1
+0.1
-0.1
-0.0
+0.1
carbon source
M9+glycerol
+0.1
+0.2
-0.2
-0.2
+0.1
plant
Tuber-Atlantic
+0.2
+0.2
-0.2
-0.2
+0.1
carbon source
M9+glycerol
-0.1
+0.2
-0.1
+0.1
+0.0
plant
Tuber-Atlantic
+0.6
-0.2
-0.4
+0.5
-0.1
plant
Tuber-Atlantic
+0.3
-0.4
-0.3
+0.8
+0.2
carbon source
M9+glycerol
+0.0
+0.2
+0.0
+0.2
+0.1
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