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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS20930 and HER17_RS20935 are separated by 342 nucleotides
HER17_RS20935 and HER17_RS20940 are separated by 278 nucleotides
HER17_RS20940 and HER17_RS20945 are separated by 47 nucleotides
HER17_RS20945 and HER17_RS20950 are separated by 113 nucleotides
HER17_RS20930: HER17_RS20930 - type II toxin-antitoxin system death-on-curing family toxin, at 4,685,891 to 4,686,280
_RS20930
HER17_RS20935: HER17_RS20935 - class I SAM-dependent methyltransferase, at 4,686,623 to 4,687,417
_RS20935
HER17_RS20940: HER17_RS20940 - hypothetical protein, at 4,687,696 to 4,688,253
_RS20940
HER17_RS20945: HER17_RS20945 - hypothetical protein, at 4,688,301 to 4,688,846
_RS20945
HER17_RS20950: HER17_RS20950 - hypothetical protein, at 4,688,960 to 4,689,346
_RS20950
Group
Condition
HER17
_RS20930
HER17
_RS20935
HER17
_RS20940
HER17
_RS20945
HER17
_RS20950
carbon source
M9+starch
-0.2
-0.0
-0.0
-0.0
-0.2
carbon source
M9+glycerol
-0.1
-0.2
+0.1
+0.0
-0.3
carbon source
M9+polygalacturonate
-0.1
-0.0
+0.0
-0.1
-0.1
plant
Tuber-Atlantic
+0.3
-0.5
-0.0
+0.1
-0.0
control
LB
+0.0
-0.2
+0.1
-0.1
-0.0
carbon source
M9+glucose
+0.2
-0.1
-0.1
-0.0
-0.1
carbon source
M9+starch
-0.1
+0.2
+0.0
+0.0
-0.2
control
LB
+0.2
-0.1
-0.3
-0.1
+0.2
carbon source
M9+glucose+arginine
+0.1
+0.3
-0.1
-0.2
-0.1
carbon source
M9+glycerol
+0.0
-0.2
+0.1
-0.1
+0.0
control
LB
+0.1
-0.0
-0.0
+0.1
-0.0
control
LB
-0.0
-0.2
+0.2
-0.0
+0.1
carbon source
M9+sucrose
-0.0
+0.3
+0.1
-0.3
-0.0
carbon source
M9+glycerol
-0.1
+0.1
+0.2
+0.0
-0.0
plant
Tuber-Atlantic
-0.1
-0.1
-0.2
+0.6
+0.0
carbon source
M9+sucrose
+0.2
+0.1
-0.2
+0.0
+0.1
carbon source
M9+glucose
-0.2
+0.2
+0.2
-0.3
+0.3
carbon source
M9+glycerol
+0.3
-0.2
+0.2
+0.0
-0.1
control
LB
+0.1
-0.2
+0.0
+0.0
+0.3
carbon source
M9+glycerol
+0.0
+0.0
+0.1
-0.0
+0.1
carbon source
M9+polygalacturonate
+0.1
+0.1
-0.1
+0.1
+0.1
carbon source
M9+glucose+arginine
+0.2
+0.1
-0.0
+0.2
-0.1
plant
Tuber-Atlantic
+0.2
-0.2
+0.1
+0.1
+0.2
carbon source
M9+glycerol
+0.1
-0.3
+0.1
+0.2
+0.3
carbon source
M9+sucrose
+0.2
+0.2
-0.0
+0.2
-0.2
carbon source
M9+glucose+arginine
+0.2
-0.0
-0.3
+0.3
+0.2
carbon source
M9+polygalacturonate
+0.1
+0.2
+0.0
+0.1
+0.1
plant
Tuber-Atlantic
+0.4
+0.2
+0.2
-0.1
-0.1
carbon source
M9+starch
+0.4
+0.2
+0.2
+0.0
-0.1
carbon source
M9+glucose
+0.2
+0.2
+0.1
+0.3
-0.0
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HER17_RS20940
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