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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS20395 and HER17_RS20400 are separated by 1 nucleotides
HER17_RS20400 and HER17_RS20405 overlap by 4 nucleotides
HER17_RS20405 and HER17_RS20410 are separated by 295 nucleotides
HER17_RS20410 and HER17_RS20415 are separated by 230 nucleotides
HER17_RS20395: HER17_RS20395 - sulfur carrier protein ThiS, at 4,570,867 to 4,571,067
_RS20395
HER17_RS20400: HER17_RS20400 - thiazole synthase, at 4,571,069 to 4,571,854
_RS20400
HER17_RS20405: HER17_RS20405 - 2-iminoacetate synthase ThiH, at 4,571,851 to 4,572,972
_RS20405
HER17_RS20410: HER17_RS20410 - PLP-dependent aminotransferase family protein, at 4,573,268 to 4,574,704
_RS20410
HER17_RS20415: HER17_RS20415 - DUF1127 domain-containing protein, at 4,574,935 to 4,575,069
_RS20415
Group
Condition
HER17
_RS20395
HER17
_RS20400
HER17
_RS20405
HER17
_RS20410
HER17
_RS20415
carbon source
M9+polygalacturonate
-4.9
-2.0
-2.1
+0.1
-0.1
carbon source
M9+polygalacturonate
-2.3
-2.0
-1.9
+0.0
-0.1
carbon source
M9+glucose
-2.3
-1.7
-1.2
-0.1
+0.2
carbon source
M9+polygalacturonate
-1.7
-1.6
-1.7
-0.1
+0.4
carbon source
M9+glucose
-2.2
-0.8
-1.4
+0.0
+0.3
carbon source
M9+sucrose
-2.1
-1.0
-0.7
-0.1
+0.0
carbon source
M9+glucose
-1.6
-1.1
-1.2
+0.0
-0.0
carbon source
M9+glucose+arginine
-1.4
-0.6
-1.1
-0.1
-0.4
carbon source
M9+glucose+arginine
-0.5
-1.4
-1.2
-0.1
+0.1
carbon source
M9+glucose+arginine
-0.4
-1.0
-1.3
+0.1
-0.0
carbon source
M9+sucrose
-1.6
-0.5
-0.5
+0.1
+0.2
plant
Tuber-Atlantic
-1.6
+0.3
+0.1
+0.2
-0.4
carbon source
M9+starch
-0.5
-0.3
+0.0
-0.0
+0.0
carbon source
M9+sucrose
+0.3
-0.1
-0.6
+0.0
-0.4
plant
Tuber-Atlantic
-1.4
+0.5
-0.1
-0.3
+0.7
carbon source
M9+glycerol
-0.6
-0.2
+0.0
+0.0
+0.1
carbon source
M9+glycerol
-0.5
+0.1
+0.0
-0.1
-0.0
control
LB
-0.6
+0.1
+0.1
-0.1
+0.0
control
LB
-0.4
+0.2
+0.0
-0.0
-0.1
carbon source
M9+glycerol
-0.3
+0.2
+0.1
-0.0
-0.3
carbon source
M9+glycerol
-0.2
+0.0
+0.1
-0.0
+0.0
carbon source
M9+starch
-0.1
-0.0
+0.0
+0.1
-0.0
plant
Tuber-Atlantic
-0.8
+0.6
-0.1
+0.0
+0.3
control
LB
-0.1
+0.2
-0.0
+0.0
-0.1
carbon source
M9+starch
+0.2
-0.0
-0.1
+0.1
-0.1
plant
Tuber-Atlantic
-0.2
+0.2
+0.0
-0.1
+0.2
carbon source
M9+glycerol
-0.3
+0.2
+0.0
+0.0
+0.2
carbon source
M9+glycerol
+0.0
+0.3
-0.0
-0.0
+0.3
control
LB
+0.2
+0.1
+0.1
+0.0
+0.1
control
LB
+0.2
+0.3
-0.0
-0.0
+0.4
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