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Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS19525 and HER17_RS19530 are separated by 80 nucleotides
HER17_RS19530 and HER17_RS19535 are separated by 11 nucleotides
HER17_RS19535 and HER17_RS19540 are separated by 88 nucleotides
HER17_RS19540 and HER17_RS19545 are separated by 9 nucleotides
HER17_RS19525: HER17_RS19525 - anaerobic ribonucleoside-triphosphate reductase, at 4,386,782 to 4,388,920
_RS19525
HER17_RS19530: HER17_RS19530 - anaerobic ribonucleoside-triphosphate reductase-activating protein, at 4,389,001 to 4,389,465
_RS19530
HER17_RS19535: HER17_RS19535 - hypothetical protein, at 4,389,477 to 4,390,130
_RS19535
HER17_RS19540: HER17_RS19540 - YhbP family protein, at 4,390,219 to 4,390,686
_RS19540
HER17_RS19545: HER17_RS19545 - helix-turn-helix transcriptional regulator, at 4,390,696 to 4,391,142
_RS19545
Group
Condition
HER17
_RS19525
HER17
_RS19530
HER17
_RS19535
HER17
_RS19540
HER17
_RS19545
plant
Tuber-Atlantic
-1.3
-1.7
-0.7
-0.2
+0.1
plant
Tuber-Atlantic
-1.3
-1.7
-0.1
-0.1
-0.4
plant
Tuber-Atlantic
-1.0
-1.0
+0.1
+0.1
-0.1
plant
Tuber-Atlantic
-0.5
-0.5
-0.0
-0.2
-0.2
carbon source
M9+glucose
-0.1
-0.5
+0.0
+0.0
-0.3
control
LB
-0.1
-0.2
-0.3
-0.2
-0.2
control
LB
-0.0
-0.1
-0.2
-0.4
-0.1
carbon source
M9+starch
-0.1
-0.5
-0.1
+0.1
-0.0
carbon source
M9+glucose+arginine
-0.2
-0.3
+0.1
+0.0
-0.2
carbon source
M9+polygalacturonate
-0.1
-0.0
-0.2
-0.2
-0.0
control
LB
-0.1
+0.1
-0.4
-0.2
+0.1
carbon source
M9+starch
-0.0
-0.0
-0.3
-0.0
-0.1
carbon source
M9+sucrose
-0.1
-0.1
-0.0
-0.1
-0.1
carbon source
M9+polygalacturonate
-0.1
-0.0
-0.0
+0.1
-0.2
carbon source
M9+polygalacturonate
-0.1
+0.1
-0.1
-0.1
-0.1
control
LB
+0.1
+0.1
-0.3
-0.2
+0.0
carbon source
M9+sucrose
-0.1
-0.0
-0.0
-0.0
-0.1
carbon source
M9+starch
-0.1
-0.1
-0.0
+0.0
-0.1
carbon source
M9+glucose+arginine
+0.0
-0.3
+0.0
+0.1
-0.1
control
LB
+0.0
+0.1
-0.2
-0.2
+0.0
carbon source
M9+glucose
-0.1
+0.2
+0.1
-0.0
-0.3
control
LB
+0.0
+0.1
+0.0
-0.2
-0.0
carbon source
M9+sucrose
+0.0
+0.0
-0.0
+0.2
+0.0
carbon source
M9+glycerol
+0.0
+0.1
+0.1
-0.0
+0.1
carbon source
M9+glycerol
-0.0
-0.0
+0.1
+0.1
+0.0
carbon source
M9+glycerol
+0.1
+0.3
-0.2
+0.0
+0.1
carbon source
M9+glycerol
+0.0
+0.0
+0.1
-0.1
+0.2
carbon source
M9+glucose
-0.1
+0.1
+0.5
+0.0
-0.2
carbon source
M9+glycerol
-0.0
-0.1
+0.1
+0.1
+0.2
carbon source
M9+glycerol
+0.1
+0.2
+0.1
+0.0
+0.0
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HER17_RS19530
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HER17_RS19535
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HER17_RS19540
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