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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS17510 and HER17_RS17515 are separated by 67 nucleotides
HER17_RS17515 and HER17_RS17520 overlap by 1 nucleotides
HER17_RS17520 and HER17_RS17525 are separated by 129 nucleotides
HER17_RS17525 and HER17_RS17535 are separated by 291 nucleotides
HER17_RS17510: HER17_RS17510 - phage/plasmid primase, P4 family, at 3,939,846 to 3,942,173
_RS17510
HER17_RS17515: HER17_RS17515 - DUF1493 family protein, at 3,942,241 to 3,942,570
_RS17515
HER17_RS17520: HER17_RS17520 - hypothetical protein, at 3,942,570 to 3,943,040
_RS17520
HER17_RS17525: HER17_RS17525 - prevent-host-death protein, at 3,943,170 to 3,943,421
_RS17525
HER17_RS17535: HER17_RS17535 - hypothetical protein, at 3,943,713 to 3,943,889
_RS17535
Group
Condition
HER17
_RS17510
HER17
_RS17515
HER17
_RS17520
HER17
_RS17525
HER17
_RS17535
plant
Tuber-Atlantic
+0.2
-0.8
+0.1
-0.3
-0.3
carbon source
M9+glucose+arginine
+0.1
+0.2
+0.1
-1.2
+0.1
carbon source
M9+glucose
-0.2
+0.0
-0.1
-0.5
+0.0
control
LB
+0.0
-0.0
-0.1
-0.5
-0.1
plant
Tuber-Atlantic
+0.2
-0.3
+0.4
-0.5
-0.4
control
LB
+0.1
-0.2
-0.1
-0.3
-0.2
plant
Tuber-Atlantic
-0.2
-0.5
-0.1
+0.1
+0.1
carbon source
M9+sucrose
-0.0
+0.0
+0.1
-0.7
+0.0
carbon source
M9+starch
+0.1
-0.2
-0.0
-0.5
+0.1
carbon source
M9+starch
-0.0
-0.3
+0.2
+0.0
-0.4
carbon source
M9+glycerol
-0.0
-0.3
-0.1
+0.2
-0.2
carbon source
M9+starch
-0.1
-0.0
-0.0
-0.3
-0.0
carbon source
M9+glycerol
+0.0
-0.1
-0.0
-0.4
+0.0
carbon source
M9+glycerol
-0.1
-0.3
+0.0
+0.0
-0.0
control
LB
+0.1
-0.4
-0.0
+0.3
-0.3
carbon source
M9+polygalacturonate
+0.1
-0.1
+0.1
-0.2
-0.2
carbon source
M9+glucose+arginine
+0.0
-0.0
+0.1
-0.3
-0.0
carbon source
M9+sucrose
+0.1
-0.2
+0.1
-0.4
+0.1
control
LB
+0.0
-0.2
-0.1
+0.1
-0.1
carbon source
M9+glucose
-0.1
+0.1
-0.0
+0.2
-0.3
carbon source
M9+glycerol
+0.0
-0.3
-0.0
-0.1
+0.2
carbon source
M9+glucose+arginine
+0.0
-0.1
-0.0
-0.2
+0.3
control
LB
+0.1
-0.1
-0.0
+0.2
-0.1
carbon source
M9+glycerol
+0.0
-0.2
+0.0
+0.1
+0.0
carbon source
M9+polygalacturonate
-0.0
-0.2
+0.0
+0.4
-0.0
carbon source
M9+glycerol
+0.0
-0.1
+0.1
+0.3
-0.1
carbon source
M9+sucrose
+0.1
+0.1
+0.0
-0.0
+0.1
control
LB
+0.1
-0.1
+0.0
+0.3
+0.1
carbon source
M9+polygalacturonate
-0.0
+0.1
+0.2
-0.0
+0.2
plant
Tuber-Atlantic
-0.3
-0.5
+0.2
+0.1
+1.1
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