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Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS17395 and HER17_RS17400 are separated by 13 nucleotides
HER17_RS17400 and HER17_RS17405 are separated by 49 nucleotides
HER17_RS17405 and HER17_RS17410 are separated by 261 nucleotides
HER17_RS17410 and HER17_RS17415 are separated by 149 nucleotides
HER17_RS17395: HER17_RS17395 - MFS transporter, at 3,923,595 to 3,924,761
_RS17395
HER17_RS17400: HER17_RS17400 - 4-oxalocrotonate tautomerase family protein, at 3,924,775 to 3,924,978
_RS17400
HER17_RS17405: HER17_RS17405 - Nramp family divalent metal transporter, at 3,925,028 to 3,926,266
_RS17405
HER17_RS17410: HER17_RS17410 - nucleotide exchange factor GrpE, at 3,926,528 to 3,927,115
_RS17410
HER17_RS17415: HER17_RS17415 - NAD(+) kinase, at 3,927,265 to 3,928,143
_RS17415
Group
Condition
HER17
_RS17395
HER17
_RS17400
HER17
_RS17405
HER17
_RS17410
HER17
_RS17415
carbon source
M9+glucose
+0.1
-0.7
+0.1
N.D.
N.D.
carbon source
M9+polygalacturonate
-0.1
-0.5
+0.1
N.D.
N.D.
carbon source
M9+glycerol
-0.1
-0.1
-0.2
N.D.
N.D.
carbon source
M9+glucose+arginine
+0.0
-0.1
-0.2
N.D.
N.D.
control
LB
-0.1
-0.0
-0.2
N.D.
N.D.
control
LB
+0.0
-0.2
-0.1
N.D.
N.D.
carbon source
M9+sucrose
+0.2
-0.4
-0.0
N.D.
N.D.
carbon source
M9+glucose
+0.1
-0.4
+0.0
N.D.
N.D.
carbon source
M9+starch
-0.0
-0.1
-0.1
N.D.
N.D.
carbon source
M9+glycerol
-0.0
-0.0
-0.2
N.D.
N.D.
control
LB
+0.0
-0.1
-0.1
N.D.
N.D.
control
LB
-0.0
+0.0
-0.2
N.D.
N.D.
carbon source
M9+glucose
+0.2
-0.5
+0.1
N.D.
N.D.
carbon source
M9+glycerol
+0.0
-0.3
+0.1
N.D.
N.D.
carbon source
M9+sucrose
-0.1
-0.2
+0.2
N.D.
N.D.
carbon source
M9+glucose+arginine
+0.1
+0.1
-0.3
N.D.
N.D.
carbon source
M9+polygalacturonate
+0.0
-0.2
+0.1
N.D.
N.D.
carbon source
M9+glucose+arginine
-0.1
-0.0
+0.1
N.D.
N.D.
plant
Tuber-Atlantic
-0.2
+0.7
-0.5
N.D.
N.D.
carbon source
M9+sucrose
+0.1
-0.1
+0.1
N.D.
N.D.
carbon source
M9+starch
+0.1
-0.1
+0.1
N.D.
N.D.
plant
Tuber-Atlantic
-0.0
-0.2
+0.2
N.D.
N.D.
control
LB
+0.1
-0.1
+0.1
N.D.
N.D.
carbon source
M9+glycerol
+0.1
+0.1
+0.1
N.D.
N.D.
carbon source
M9+glycerol
+0.0
+0.2
-0.0
N.D.
N.D.
carbon source
M9+polygalacturonate
+0.1
+0.1
+0.0
N.D.
N.D.
carbon source
M9+starch
+0.1
+0.2
+0.0
N.D.
N.D.
carbon source
M9+glycerol
+0.1
+0.1
+0.1
N.D.
N.D.
plant
Tuber-Atlantic
+0.1
+0.5
-0.2
N.D.
N.D.
plant
Tuber-Atlantic
+0.1
+0.3
-0.1
N.D.
N.D.
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