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Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS17075 and HER17_RS17080 are separated by 65 nucleotides
HER17_RS17080 and HER17_RS17085 are separated by 41 nucleotides
HER17_RS17085 and HER17_RS17090 are separated by 51 nucleotides
HER17_RS17090 and HER17_RS17095 are separated by 29 nucleotides
HER17_RS17075: HER17_RS17075 - MFS transporter, at 3,844,299 to 3,845,675
_RS17075
HER17_RS17080: HER17_RS17080 - FMN-binding protein, at 3,845,741 to 3,846,088
_RS17080
HER17_RS17085: HER17_RS17085 - FAD-dependent oxidoreductase, at 3,846,130 to 3,847,659
_RS17085
HER17_RS17090: HER17_RS17090 - DNA oxidative demethylase AlkB, at 3,847,711 to 3,848,367
_RS17090
HER17_RS17095: HER17_RS17095 - bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada, at 3,848,397 to 3,849,464
_RS17095
Group
Condition
HER17
_RS17075
HER17
_RS17080
HER17
_RS17085
HER17
_RS17090
HER17
_RS17095
plant
Tuber-Atlantic
-0.1
+0.7
+0.0
-1.3
-0.4
carbon source
M9+glucose
+0.0
-0.5
+0.1
-0.6
+0.2
carbon source
M9+starch
+0.0
-0.2
+0.2
-0.4
-0.2
carbon source
M9+sucrose
-0.1
-0.1
-0.1
-0.3
+0.0
carbon source
M9+polygalacturonate
-0.0
-0.2
+0.1
-0.4
-0.1
carbon source
M9+glycerol
+0.1
-0.0
-0.0
-0.4
-0.2
carbon source
M9+polygalacturonate
+0.1
-0.3
+0.1
-0.2
-0.1
carbon source
M9+glucose
-0.0
-0.5
+0.0
+0.1
-0.1
carbon source
M9+glucose+arginine
+0.2
-0.3
-0.1
-0.3
+0.2
carbon source
M9+glucose+arginine
+0.1
-0.4
+0.0
+0.0
-0.1
carbon source
M9+polygalacturonate
+0.1
-0.1
+0.0
-0.5
+0.2
carbon source
M9+glycerol
+0.0
-0.2
-0.1
+0.0
-0.1
plant
Tuber-Atlantic
-0.0
-0.0
-0.1
+0.3
-0.3
control
LB
+0.0
-0.2
-0.0
+0.3
-0.0
carbon source
M9+glycerol
+0.0
-0.1
-0.0
+0.3
-0.2
carbon source
M9+glucose+arginine
-0.2
-0.1
-0.1
+0.3
+0.1
carbon source
M9+glucose
+0.1
-0.1
-0.0
+0.2
-0.1
carbon source
M9+sucrose
+0.1
-0.1
+0.1
-0.1
+0.1
carbon source
M9+starch
+0.0
-0.2
+0.0
+0.1
+0.1
control
LB
-0.0
+0.2
+0.0
+0.1
-0.2
carbon source
M9+glycerol
+0.1
+0.0
-0.1
+0.3
-0.1
control
LB
-0.1
-0.0
+0.0
+0.2
+0.0
carbon source
M9+starch
+0.2
+0.0
+0.0
-0.0
+0.1
carbon source
M9+glycerol
+0.0
+0.1
-0.0
+0.2
+0.0
carbon source
M9+sucrose
+0.0
-0.0
-0.0
+0.3
+0.0
control
LB
-0.1
+0.1
-0.0
+0.5
-0.2
plant
Tuber-Atlantic
+0.1
-0.4
-0.0
+0.2
+0.5
control
LB
-0.1
+0.0
+0.0
+0.3
+0.2
plant
Tuber-Atlantic
+0.2
-0.1
+0.0
+0.3
+0.1
carbon source
M9+glycerol
-0.0
+0.2
+0.0
+0.4
+0.1
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HER17_RS17080
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HER17_RS17085
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