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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS16965 and HER17_RS16970 are separated by 147 nucleotides
HER17_RS16970 and HER17_RS16975 are separated by 547 nucleotides
HER17_RS16975 and HER17_RS16980 are separated by 14 nucleotides
HER17_RS16980 and HER17_RS16985 are separated by 305 nucleotides
HER17_RS16965: HER17_RS16965 - AEC family transporter, at 3,817,029 to 3,817,955
_RS16965
HER17_RS16970: HER17_RS16970 - LysR family transcriptional regulator, at 3,818,103 to 3,818,996
_RS16970
HER17_RS16975: HER17_RS16975 - PAS and helix-turn-helix domain-containing protein, at 3,819,544 to 3,820,233
_RS16975
HER17_RS16980: HER17_RS16980 - cytosine permease, at 3,820,248 to 3,821,564
_RS16980
HER17_RS16985: HER17_RS16985 - Svx/AvrXca family virulence/avirulence protein, at 3,821,870 to 3,823,735
_RS16985
Group
Condition
HER17
_RS16965
HER17
_RS16970
HER17
_RS16975
HER17
_RS16980
HER17
_RS16985
carbon source
M9+glucose+arginine
+0.0
-0.8
-0.3
+0.0
-0.1
control
LB
-0.0
-1.1
+0.2
-0.1
+0.0
carbon source
M9+glucose+arginine
+0.1
-0.8
+0.0
-0.2
-0.0
carbon source
M9+glucose+arginine
-0.3
-0.3
-0.1
-0.0
-0.1
carbon source
M9+sucrose
+0.0
-0.3
-0.2
-0.0
-0.0
carbon source
M9+glycerol
+0.2
-0.3
+0.1
-0.3
-0.0
carbon source
M9+sucrose
-0.0
+0.0
-0.2
-0.2
-0.0
carbon source
M9+glycerol
+0.0
-0.3
+0.1
-0.0
-0.1
carbon source
M9+polygalacturonate
-0.0
-0.1
-0.1
-0.0
-0.1
control
LB
+0.3
-0.8
+0.1
-0.0
+0.1
carbon source
M9+glycerol
-0.0
-0.1
+0.0
-0.1
-0.1
carbon source
M9+glucose
+0.0
-0.4
+0.2
-0.1
+0.0
carbon source
M9+glucose
-0.2
+0.1
-0.1
-0.1
+0.0
carbon source
M9+starch
-0.1
+0.3
-0.2
-0.1
-0.1
control
LB
+0.1
-0.3
+0.2
-0.2
+0.0
carbon source
M9+polygalacturonate
-0.1
-0.0
-0.1
+0.1
-0.0
carbon source
M9+glycerol
+0.2
-0.4
+0.2
-0.1
+0.1
carbon source
M9+glycerol
+0.1
-0.5
+0.3
+0.1
-0.1
carbon source
M9+glycerol
+0.1
-0.4
+0.2
-0.0
+0.1
control
LB
+0.2
-0.3
+0.1
-0.0
+0.1
carbon source
M9+starch
-0.1
+0.4
-0.1
+0.0
-0.0
carbon source
M9+sucrose
+0.0
+0.3
+0.0
+0.0
-0.1
carbon source
M9+glucose
-0.0
+0.5
-0.1
-0.0
-0.1
control
LB
+0.1
-0.0
+0.2
-0.0
+0.0
control
LB
+0.2
+0.2
+0.1
+0.0
-0.0
carbon source
M9+starch
-0.1
+0.5
-0.0
+0.0
-0.0
plant
Tuber-Atlantic
-0.3
-0.7
+1.1
+0.7
-0.0
plant
Tuber-Atlantic
+0.0
-0.1
+0.7
+0.6
-0.0
plant
Tuber-Atlantic
-0.0
+0.6
+0.9
+0.6
-0.0
plant
Tuber-Atlantic
-0.1
+0.2
+1.3
+0.9
+0.1
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HER17_RS16975
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