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Protein
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Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS16220 and HER17_RS16225 are separated by 61 nucleotides
HER17_RS16225 and HER17_RS16230 are separated by 73 nucleotides
HER17_RS16230 and HER17_RS16235 are separated by 240 nucleotides
HER17_RS16235 and HER17_RS16240 overlap by 14 nucleotides
HER17_RS16220: HER17_RS16220 - DNA mismatch repair protein MutS, at 3,660,359 to 3,662,923
_RS16220
HER17_RS16225: HER17_RS16225 - envelope stress response activation lipoprotein NlpE, at 3,662,985 to 3,663,683
_RS16225
HER17_RS16230: HER17_RS16230 - YaeQ family protein, at 3,663,757 to 3,664,311
_RS16230
HER17_RS16235: HER17_RS16235 - YaeP family protein, at 3,664,552 to 3,664,752
_RS16235
HER17_RS16240: HER17_RS16240 - Rho-binding antiterminator, at 3,664,739 to 3,664,999
_RS16240
Group
Condition
HER17
_RS16220
HER17
_RS16225
HER17
_RS16230
HER17
_RS16235
HER17
_RS16240
plant
Tuber-Atlantic
-0.1
-0.1
+0.3
-0.7
-0.4
plant
Tuber-Atlantic
+0.3
-0.1
+0.1
-0.7
-0.5
plant
Tuber-Atlantic
-0.1
-0.1
+0.2
-0.3
-0.5
carbon source
M9+sucrose
-0.2
-0.0
+0.0
+0.0
-0.1
carbon source
M9+glycerol
-0.1
-0.1
-0.0
-0.0
-0.1
carbon source
M9+glucose
+0.0
-0.1
-0.2
+0.1
-0.0
carbon source
M9+polygalacturonate
-0.1
+0.0
-0.0
+0.2
-0.2
carbon source
M9+glucose+arginine
-0.0
-0.1
+0.2
-0.5
+0.4
carbon source
M9+starch
-0.0
+0.1
+0.0
+0.1
-0.3
control
LB
-0.1
+0.0
+0.0
-0.1
+0.1
plant
Tuber-Atlantic
-0.1
+0.3
-0.1
-0.3
+0.1
control
LB
-0.1
+0.0
+0.1
-0.1
+0.1
carbon source
M9+glucose
-0.0
-0.1
-0.0
+0.1
+0.1
carbon source
M9+glucose
+0.0
-0.2
+0.1
-0.0
+0.2
carbon source
M9+sucrose
-0.1
+0.1
+0.0
+0.2
-0.1
carbon source
M9+polygalacturonate
-0.1
+0.1
+0.1
-0.1
+0.1
carbon source
M9+starch
+0.0
+0.1
+0.0
+0.2
-0.1
control
LB
-0.2
+0.0
+0.1
+0.1
+0.2
control
LB
-0.1
+0.0
+0.1
+0.1
+0.1
carbon source
M9+polygalacturonate
+0.0
+0.1
-0.0
+0.3
-0.1
carbon source
M9+sucrose
-0.1
+0.1
+0.0
+0.2
+0.1
carbon source
M9+glucose+arginine
+0.1
-0.1
-0.0
+0.3
+0.1
carbon source
M9+starch
-0.0
-0.0
+0.1
+0.2
+0.3
carbon source
M9+glycerol
-0.1
+0.0
+0.1
+0.2
+0.2
control
LB
+0.0
-0.0
+0.1
+0.1
+0.2
carbon source
M9+glycerol
-0.1
+0.1
+0.1
+0.2
+0.3
carbon source
M9+glucose+arginine
+0.0
-0.1
-0.0
+0.4
+0.3
carbon source
M9+glycerol
-0.1
+0.1
+0.1
+0.3
+0.2
carbon source
M9+glycerol
-0.0
+0.0
+0.2
+0.2
+0.3
carbon source
M9+glycerol
+0.0
+0.0
-0.1
+0.4
+0.3
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