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Protein
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Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS16070 and HER17_RS16075 overlap by 27 nucleotides
HER17_RS16075 and HER17_RS16080 overlap by 1 nucleotides
HER17_RS16080 and HER17_RS16085 overlap by 4 nucleotides
HER17_RS16085 and HER17_RS16090 are separated by 261 nucleotides
HER17_RS16070: HER17_RS16070 - GntR family transcriptional regulator, at 3,612,476 to 3,613,222
_RS16070
HER17_RS16075: HER17_RS16075 - PfkB family carbohydrate kinase, at 3,613,196 to 3,614,173
_RS16075
HER17_RS16080: HER17_RS16080 - ADP-ribosylglycohydrolase family protein, at 3,614,173 to 3,615,174
_RS16080
HER17_RS16085: HER17_RS16085 - nucleoside permease, at 3,615,171 to 3,616,451
_RS16085
HER17_RS16090: HER17_RS16090 - pyrimidine/purine nucleoside phosphorylase, at 3,616,713 to 3,616,997
_RS16090
Group
Condition
HER17
_RS16070
HER17
_RS16075
HER17
_RS16080
HER17
_RS16085
HER17
_RS16090
carbon source
M9+glucose
-1.2
+0.2
-0.4
-0.0
+0.4
carbon source
M9+glucose+arginine
-0.7
-0.1
+0.1
-0.1
-0.2
control
LB
-1.0
-0.0
+0.1
+0.1
-0.0
carbon source
M9+glucose
-1.1
-0.0
-0.0
-0.2
+0.6
carbon source
M9+glycerol
-0.6
+0.1
+0.0
+0.1
-0.3
carbon source
M9+glycerol
-0.8
+0.1
+0.2
+0.1
-0.2
plant
Tuber-Atlantic
-0.4
+0.0
-0.3
+0.2
-0.0
control
LB
-0.6
-0.0
-0.0
+0.0
+0.0
plant
Tuber-Atlantic
+0.2
-0.2
+0.0
+0.0
-0.6
carbon source
M9+glycerol
-0.5
+0.0
+0.0
+0.1
-0.1
plant
Tuber-Atlantic
-0.5
+0.0
+0.4
+0.1
-0.5
carbon source
M9+glucose+arginine
+0.3
-0.1
-0.0
-0.2
-0.3
carbon source
M9+polygalacturonate
-0.4
-0.0
+0.3
-0.0
-0.0
carbon source
M9+starch
-0.3
-0.2
+0.2
-0.1
+0.1
carbon source
M9+glycerol
-0.2
+0.1
-0.0
+0.1
+0.0
plant
Tuber-Atlantic
+0.0
+0.2
+0.1
+0.0
-0.4
control
LB
-0.3
+0.1
+0.1
+0.0
-0.0
control
LB
-0.5
+0.2
+0.3
+0.0
+0.1
control
LB
-0.2
+0.1
+0.1
+0.0
-0.1
carbon source
M9+starch
-0.3
+0.1
+0.1
-0.0
+0.1
carbon source
M9+sucrose
-0.1
-0.0
-0.0
-0.1
+0.3
carbon source
M9+polygalacturonate
-0.2
-0.1
+0.2
+0.1
+0.2
carbon source
M9+starch
+0.1
+0.2
+0.1
-0.1
-0.2
control
LB
+0.2
-0.0
+0.0
-0.0
-0.0
carbon source
M9+polygalacturonate
+0.2
-0.0
+0.0
-0.1
-0.0
carbon source
M9+glucose
+0.2
-0.1
+0.3
-0.0
-0.2
carbon source
M9+glycerol
-0.1
-0.1
+0.2
+0.0
+0.3
carbon source
M9+glucose+arginine
-0.0
+0.1
+0.2
+0.2
-0.1
carbon source
M9+sucrose
+0.3
+0.2
+0.1
+0.0
-0.3
carbon source
M9+sucrose
+0.1
+0.0
+0.1
+0.0
+0.5
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HER17_RS16080
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