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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS15745 and HER17_RS15750 are separated by 17 nucleotides
HER17_RS15750 and HER17_RS15755 are separated by 599 nucleotides
HER17_RS15755 and HER17_RS15760 are separated by 53 nucleotides
HER17_RS15760 and HER17_RS15770 are separated by 743 nucleotides
HER17_RS15745: HER17_RS15745 - type B 50S ribosomal protein L31, at 3,540,847 to 3,541,095
_RS15745
HER17_RS15750: HER17_RS15750 - type B 50S ribosomal protein L36, at 3,541,113 to 3,541,256
_RS15750
HER17_RS15755: HER17_RS15755 - Hha toxicity modulator TomB, at 3,541,856 to 3,542,224
_RS15755
HER17_RS15760: HER17_RS15760 - hemolysin expression modulator Hha, at 3,542,278 to 3,542,481
_RS15760
HER17_RS15770: HER17_RS15770 - MGMT family protein, at 3,543,225 to 3,543,545
_RS15770
Group
Condition
HER17
_RS15745
HER17
_RS15750
HER17
_RS15755
HER17
_RS15760
HER17
_RS15770
carbon source
M9+glucose
-0.4
+0.2
-1.0
N.D.
-0.2
carbon source
M9+glucose+arginine
-0.3
-0.0
-0.9
N.D.
+0.1
carbon source
M9+glucose
-0.4
+0.4
-1.0
N.D.
+0.1
carbon source
M9+glucose
-0.2
+0.1
-1.0
N.D.
+0.3
carbon source
M9+glucose+arginine
-0.4
+0.4
-0.8
N.D.
-0.1
carbon source
M9+glycerol
-0.2
-0.2
-0.2
N.D.
-0.2
control
LB
-0.2
-0.1
-0.2
N.D.
-0.1
carbon source
M9+glycerol
-0.1
+0.0
-0.3
N.D.
-0.1
carbon source
M9+glycerol
-0.1
-0.3
-0.2
N.D.
+0.0
carbon source
M9+glycerol
-0.1
-0.0
-0.2
N.D.
-0.1
control
LB
-0.2
-0.2
-0.1
N.D.
+0.0
control
LB
-0.2
-0.1
-0.1
N.D.
+0.1
carbon source
M9+glucose+arginine
-0.0
+0.3
-1.0
N.D.
+0.3
plant
Tuber-Atlantic
+0.0
-0.0
+0.1
N.D.
-0.4
control
LB
-0.1
-0.1
-0.1
N.D.
+0.1
carbon source
M9+sucrose
-0.0
+0.1
-0.3
N.D.
+0.1
carbon source
M9+sucrose
+0.0
+0.1
-0.4
N.D.
+0.1
plant
Tuber-Atlantic
-0.3
-0.4
+0.2
N.D.
+0.3
carbon source
M9+glycerol
-0.2
+0.0
-0.1
N.D.
+0.1
carbon source
M9+sucrose
+0.0
+0.2
-0.3
N.D.
+0.0
control
LB
-0.1
+0.0
-0.0
N.D.
+0.1
control
LB
+0.2
+0.2
-0.3
N.D.
-0.0
plant
Tuber-Atlantic
+0.0
-0.3
+0.4
N.D.
-0.0
carbon source
M9+starch
-0.0
+0.0
-0.1
N.D.
+0.1
carbon source
M9+polygalacturonate
+0.3
+0.0
-0.3
N.D.
-0.0
carbon source
M9+starch
+0.2
-0.1
-0.0
N.D.
+0.1
carbon source
M9+starch
+0.1
+0.2
-0.0
N.D.
+0.1
carbon source
M9+polygalacturonate
-0.0
+0.2
-0.1
N.D.
+0.3
plant
Tuber-Atlantic
-0.2
+0.2
+0.7
N.D.
-0.2
carbon source
M9+polygalacturonate
+0.1
+0.3
+0.1
N.D.
+0.2
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