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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS15645 and HER17_RS15650 are separated by 16 nucleotides
HER17_RS15650 and HER17_RS15655 are separated by 145 nucleotides
HER17_RS15655 and HER17_RS15660 are separated by 292 nucleotides
HER17_RS15660 and HER17_RS15665 are separated by 161 nucleotides
HER17_RS15645: HER17_RS15645 - GTPase, at 3,513,690 to 3,514,676
_RS15645
HER17_RS15650: HER17_RS15650 - YbdD/YjiX family protein, at 3,514,693 to 3,514,896
_RS15650
HER17_RS15655: HER17_RS15655 - carbon starvation protein A, at 3,515,042 to 3,517,195
_RS15655
HER17_RS15660: HER17_RS15660 - discoidin domain-containing protein, at 3,517,488 to 3,519,485
_RS15660
HER17_RS15665: HER17_RS15665 - discoidin domain-containing protein, at 3,519,647 to 3,521,659
_RS15665
Group
Condition
HER17
_RS15645
HER17
_RS15650
HER17
_RS15655
HER17
_RS15660
HER17
_RS15665
carbon source
M9+polygalacturonate
-0.3
-0.3
-0.2
-0.0
-0.0
carbon source
M9+polygalacturonate
-0.3
-0.2
-0.2
-0.0
+0.1
carbon source
M9+sucrose
-0.2
-0.3
-0.1
+0.0
+0.0
carbon source
M9+sucrose
-0.2
-0.2
-0.1
+0.0
+0.1
carbon source
M9+sucrose
+0.0
-0.1
-0.3
+0.0
+0.1
control
LB
-0.1
-0.3
+0.0
+0.0
+0.0
carbon source
M9+glycerol
+0.1
-0.3
+0.0
-0.1
+0.1
plant
Tuber-Atlantic
-0.1
-0.2
+0.1
-0.0
+0.1
control
LB
-0.0
-0.2
+0.0
-0.0
+0.0
carbon source
M9+glycerol
-0.1
-0.2
-0.0
+0.0
+0.1
carbon source
M9+starch
-0.2
-0.0
-0.1
+0.0
+0.1
carbon source
M9+glycerol
-0.1
-0.0
-0.0
-0.0
-0.0
carbon source
M9+starch
-0.1
-0.0
-0.0
+0.0
-0.0
carbon source
M9+glycerol
+0.0
-0.1
-0.0
-0.0
-0.0
carbon source
M9+starch
-0.2
-0.0
-0.0
+0.0
+0.1
control
LB
-0.1
-0.1
+0.0
+0.0
+0.0
carbon source
M9+glycerol
-0.1
-0.0
+0.1
-0.1
+0.1
control
LB
-0.0
-0.1
+0.1
+0.0
+0.0
carbon source
M9+glycerol
-0.0
-0.0
-0.0
-0.0
+0.1
control
LB
+0.1
-0.0
+0.0
-0.1
+0.0
carbon source
M9+glucose
-0.3
+0.1
+0.2
+0.0
-0.0
control
LB
-0.0
+0.1
+0.0
-0.0
+0.0
carbon source
M9+glucose+arginine
+0.1
-0.1
+0.2
-0.1
+0.0
carbon source
M9+glucose+arginine
+0.0
+0.3
-0.2
+0.0
+0.0
carbon source
M9+glucose
+0.1
+0.2
+0.1
-0.0
-0.1
carbon source
M9+glucose+arginine
-0.2
+0.5
+0.2
-0.2
+0.0
plant
Tuber-Atlantic
-0.1
+0.3
+0.0
-0.2
+0.4
plant
Tuber-Atlantic
-0.1
-0.3
+0.3
+0.4
+0.1
plant
Tuber-Atlantic
+0.3
+0.2
-0.2
+0.2
-0.0
carbon source
M9+glucose
-0.1
+0.7
+0.3
+0.2
+0.0
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