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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS15455 and HER17_RS15460 are separated by 328 nucleotides
HER17_RS15460 and HER17_RS15465 are separated by 337 nucleotides
HER17_RS15465 and HER17_RS15470 overlap by 1 nucleotides
HER17_RS15470 and HER17_RS15475 are separated by 275 nucleotides
HER17_RS15455: HER17_RS15455 - uracil permease, at 3,463,897 to 3,465,186
_RS15455
HER17_RS15460: HER17_RS15460 - uracil phosphoribosyltransferase, at 3,465,515 to 3,466,141
_RS15460
HER17_RS15465: HER17_RS15465 - phosphoribosylformylglycinamidine cyclo-ligase, at 3,466,479 to 3,467,516
_RS15465
HER17_RS15470: HER17_RS15470 - phosphoribosylglycinamide formyltransferase, at 3,467,516 to 3,468,154
_RS15470
HER17_RS15475: HER17_RS15475 - ABC transporter substrate-binding protein, at 3,468,430 to 3,469,536
_RS15475
Group
Condition
HER17
_RS15455
HER17
_RS15460
HER17
_RS15465
HER17
_RS15470
HER17
_RS15475
carbon source
M9+polygalacturonate
-0.1
+0.3
-5.1
-1.1
+0.0
carbon source
M9+polygalacturonate
-0.0
-0.1
-4.2
-1.2
-0.1
carbon source
M9+polygalacturonate
-0.1
-0.3
-3.9
-0.8
-0.1
carbon source
M9+starch
-0.0
-0.2
-3.0
-1.7
-0.0
carbon source
M9+starch
-0.0
-0.1
-3.0
-1.5
-0.1
carbon source
M9+starch
+0.1
+0.0
-2.6
-1.7
-0.1
carbon source
M9+sucrose
+0.1
-0.1
-4.3
+0.2
-0.1
carbon source
M9+glycerol
+0.0
-0.6
-3.4
+0.0
+0.1
carbon source
M9+glycerol
+0.1
-0.5
-3.4
-0.0
-0.1
carbon source
M9+sucrose
-0.1
-0.2
-3.5
+0.1
-0.1
carbon source
M9+glucose
-0.3
-0.8
-3.8
+1.0
+0.1
carbon source
M9+glycerol
+0.1
-0.1
-3.6
-0.1
+0.0
carbon source
M9+glycerol
+0.2
-0.5
-3.5
+0.2
+0.0
carbon source
M9+sucrose
-0.0
-0.2
-3.4
+0.0
+0.0
carbon source
M9+glycerol
+0.2
-0.1
-3.3
-0.1
+0.1
carbon source
M9+glucose+arginine
+0.0
-0.4
-3.5
+0.9
-0.2
carbon source
M9+glucose
+0.1
-0.6
-3.3
+1.0
-0.4
carbon source
M9+glucose+arginine
-0.2
-0.5
-3.3
+1.1
-0.2
carbon source
M9+glycerol
-0.0
-0.0
-3.1
+0.1
-0.1
carbon source
M9+glucose+arginine
+0.0
-0.3
-3.8
+0.9
+0.1
carbon source
M9+glucose
-0.3
-0.4
-3.0
+1.2
-0.1
plant
Tuber-Atlantic
-0.2
+0.1
-0.9
-0.5
+0.1
plant
Tuber-Atlantic
-0.3
+1.0
-1.9
-0.4
+0.3
plant
Tuber-Atlantic
-0.2
+0.4
-0.8
-0.0
-0.0
control
LB
+0.1
-0.2
-0.1
+0.0
-0.1
plant
Tuber-Atlantic
-0.2
+0.4
-0.4
+0.1
-0.0
control
LB
+0.1
-0.4
-0.0
+0.2
+0.1
control
LB
+0.1
-0.2
-0.1
+0.1
+0.1
control
LB
+0.1
-0.0
+0.1
+0.0
+0.1
control
LB
+0.2
-0.2
+0.1
+0.2
+0.0
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