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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS15390 and HER17_RS15395 are separated by 74 nucleotides
HER17_RS15395 and HER17_RS15400 are separated by 17 nucleotides
HER17_RS15400 and HER17_RS15405 are separated by 219 nucleotides
HER17_RS15405 and HER17_RS15410 are separated by 143 nucleotides
HER17_RS15390: HER17_RS15390 - hypothetical protein, at 3,451,704 to 3,452,075
_RS15390
HER17_RS15395: HER17_RS15395 - GNAT family N-acetyltransferase, at 3,452,150 to 3,454,204
_RS15395
HER17_RS15400: HER17_RS15400 - DUF441 domain-containing protein, at 3,454,222 to 3,454,674
_RS15400
HER17_RS15405: HER17_RS15405 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 3,454,894 to 3,455,607
_RS15405
HER17_RS15410: HER17_RS15410 - outer membrane protein assembly factor BamC, at 3,455,751 to 3,456,788
_RS15410
Group
Condition
HER17
_RS15390
HER17
_RS15395
HER17
_RS15400
HER17
_RS15405
HER17
_RS15410
carbon source
M9+polygalacturonate
-0.3
+0.0
-0.2
-4.9
-2.0
carbon source
M9+glucose
-0.2
-0.2
-0.6
-4.6
-1.2
carbon source
M9+glucose+arginine
-0.0
-0.2
-0.0
-4.8
-1.6
carbon source
M9+polygalacturonate
-0.3
-0.1
-0.1
-4.6
-1.6
carbon source
M9+glucose+arginine
-0.1
-0.1
-0.2
-4.5
-1.5
carbon source
M9+glucose+arginine
-0.2
+0.1
-0.5
-4.7
-1.1
carbon source
M9+glycerol
-0.1
-0.0
-0.2
-5.3
-0.7
carbon source
M9+glucose
-0.3
-0.2
-0.2
-4.4
-1.1
carbon source
M9+sucrose
-0.2
-0.2
+0.1
-4.5
-1.3
carbon source
M9+polygalacturonate
-0.4
+0.0
+0.1
-4.4
-1.5
carbon source
M9+glycerol
+0.0
+0.1
+0.1
-4.9
-1.0
carbon source
M9+sucrose
-0.1
-0.2
-0.1
-4.2
-1.0
carbon source
M9+glucose
-0.1
+0.1
-0.3
-3.8
-1.3
carbon source
M9+glycerol
-0.1
+0.0
-0.2
-3.6
-1.3
carbon source
M9+sucrose
+0.1
+0.1
-0.2
-3.7
-1.3
carbon source
M9+glycerol
+0.0
+0.1
+0.0
-4.2
-0.9
carbon source
M9+starch
-0.2
+0.2
-0.2
-3.6
-1.0
carbon source
M9+starch
-0.0
-0.1
-0.1
-3.4
-1.2
carbon source
M9+glycerol
+0.1
+0.1
-0.0
-3.6
-0.9
carbon source
M9+starch
-0.3
+0.1
+0.2
-3.0
-1.2
carbon source
M9+glycerol
+0.2
+0.1
-0.0
-3.1
-1.2
plant
Tuber-Atlantic
-0.6
+0.3
-0.0
-1.9
-0.7
plant
Tuber-Atlantic
-0.1
+0.2
+0.3
-2.6
+0.1
plant
Tuber-Atlantic
-0.2
-0.1
+0.1
-1.0
-0.3
plant
Tuber-Atlantic
-0.1
-0.0
-0.1
-0.6
-0.3
control
LB
-0.1
+0.1
+0.0
-0.3
-0.2
control
LB
-0.1
+0.1
-0.0
-0.2
-0.1
control
LB
+0.1
+0.0
-0.0
-0.4
-0.1
control
LB
-0.1
+0.1
-0.1
-0.2
+0.0
control
LB
+0.2
+0.1
+0.1
-0.2
+0.0
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HER17_RS15400
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