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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS15330 and HER17_RS15335 are separated by 163 nucleotides
HER17_RS15335 and HER17_RS15340 are separated by 228 nucleotides
HER17_RS15340 and HER17_RS15345 are separated by 106 nucleotides
HER17_RS15345 and HER17_RS15350 are separated by 33 nucleotides
HER17_RS15330: HER17_RS15330 - esterase, at 3,434,596 to 3,435,213
_RS15330
HER17_RS15335: HER17_RS15335 - DUF1272 domain-containing protein, at 3,435,377 to 3,435,604
_RS15335
HER17_RS15340: HER17_RS15340 - autotransporter domain-containing protein, at 3,435,833 to 3,438,787
_RS15340
HER17_RS15345: HER17_RS15345 - insulinase family protein, at 3,438,894 to 3,441,608
_RS15345
HER17_RS15350: HER17_RS15350 - ABC transporter ATP-binding protein/permease, at 3,441,642 to 3,443,423
_RS15350
Group
Condition
HER17
_RS15330
HER17
_RS15335
HER17
_RS15340
HER17
_RS15345
HER17
_RS15350
plant
Tuber-Atlantic
-0.4
-1.1
+0.3
+0.1
-0.2
carbon source
M9+glycerol
-0.1
-0.4
-0.0
-0.0
-0.0
carbon source
M9+glycerol
-0.2
-0.3
-0.0
+0.0
-0.1
carbon source
M9+glucose
+0.0
+0.0
-0.1
-0.2
-0.2
control
LB
-0.1
-0.3
-0.0
+0.0
+0.0
plant
Tuber-Atlantic
+0.0
-0.3
+0.1
-0.1
+0.0
carbon source
M9+glycerol
-0.3
-0.2
+0.1
+0.1
+0.0
carbon source
M9+glycerol
-0.0
-0.2
+0.0
-0.0
-0.0
carbon source
M9+glucose+arginine
-0.1
+0.1
-0.1
+0.1
-0.2
carbon source
M9+glucose
-0.1
-0.1
+0.0
-0.1
-0.0
carbon source
M9+glucose+arginine
+0.2
-0.2
-0.0
-0.0
-0.1
carbon source
M9+glucose+arginine
+0.2
-0.3
-0.1
+0.1
+0.0
plant
Tuber-Atlantic
-0.3
-0.1
+0.2
+0.2
-0.0
control
LB
-0.2
-0.1
+0.1
+0.1
+0.1
carbon source
M9+glycerol
-0.5
+0.4
+0.0
+0.0
+0.1
control
LB
-0.1
+0.2
-0.1
+0.1
+0.0
carbon source
M9+glucose
-0.1
+0.4
+0.1
-0.1
+0.0
carbon source
M9+starch
-0.0
+0.1
+0.2
-0.0
+0.0
plant
Tuber-Atlantic
+0.0
-0.3
+0.4
+0.1
+0.0
carbon source
M9+polygalacturonate
-0.1
+0.2
+0.0
+0.1
+0.0
carbon source
M9+glycerol
-0.0
+0.4
+0.0
+0.1
-0.1
carbon source
M9+polygalacturonate
+0.2
+0.2
+0.0
+0.1
-0.1
control
LB
-0.0
+0.1
+0.1
+0.2
+0.1
control
LB
-0.1
+0.5
+0.0
-0.0
+0.1
carbon source
M9+starch
+0.2
+0.3
-0.1
+0.1
-0.0
control
LB
-0.0
+0.2
+0.1
+0.0
+0.2
carbon source
M9+polygalacturonate
+0.0
+0.6
+0.0
+0.0
-0.0
carbon source
M9+sucrose
+0.1
+0.6
+0.0
+0.0
+0.1
carbon source
M9+starch
+0.2
+0.6
+0.0
+0.1
+0.0
carbon source
M9+sucrose
+0.2
+0.6
+0.1
-0.0
+0.1
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HER17_RS15340
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