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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS15280 and HER17_RS15285 are separated by 692 nucleotides
HER17_RS15285 and HER17_RS15290 are separated by 81 nucleotides
HER17_RS15290 and HER17_RS15295 are separated by 217 nucleotides
HER17_RS15295 and HER17_RS15305 are separated by 463 nucleotides
HER17_RS15280: HER17_RS15280 - Sec-independent protein translocase subunit TatA, at 3,427,118 to 3,427,315
_RS15280
HER17_RS15285: HER17_RS15285 - fluoride efflux transporter CrcB, at 3,428,008 to 3,428,391
_RS15285
HER17_RS15290: HER17_RS15290 - transcription antiterminator/RNA stability regulator CspE, at 3,428,473 to 3,428,682
_RS15290
HER17_RS15295: HER17_RS15295 - aspartate/glutamate racemase family protein, at 3,428,900 to 3,429,610
_RS15295
HER17_RS15305: HER17_RS15305 - ArsC family reductase, at 3,430,074 to 3,430,451
_RS15305
Group
Condition
HER17
_RS15280
HER17
_RS15285
HER17
_RS15290
HER17
_RS15295
HER17
_RS15305
carbon source
M9+glucose
+0.7
+0.7
-4.7
+0.2
-0.7
carbon source
M9+glucose
-0.3
+0.3
-2.9
-0.1
-0.6
carbon source
M9+glucose+arginine
+0.5
-0.1
-3.7
+0.4
-0.5
carbon source
M9+glucose+arginine
+0.3
-0.1
-3.1
+0.0
-0.5
carbon source
M9+glucose+arginine
-0.6
-0.1
-1.8
-0.2
-0.4
carbon source
M9+glucose
-0.2
+0.5
-2.4
+0.2
-0.6
carbon source
M9+sucrose
-0.0
-0.0
-0.6
+0.1
-0.8
carbon source
M9+starch
-0.2
-0.4
-0.5
-0.0
-0.1
carbon source
M9+sucrose
-0.5
+0.2
+0.0
-0.1
-0.6
control
LB
-0.2
+0.1
-0.2
-0.1
-0.4
carbon source
M9+glycerol
-0.0
+0.5
-1.0
-0.0
-0.1
control
LB
-0.1
-0.1
+0.0
-0.2
-0.2
carbon source
M9+polygalacturonate
+0.0
-0.0
+0.2
-0.1
-0.6
control
LB
-0.0
+0.1
-0.3
+0.1
-0.3
carbon source
M9+glycerol
-0.1
-0.1
-0.2
+0.0
-0.1
carbon source
M9+starch
-0.3
+0.6
-0.5
-0.1
-0.1
carbon source
M9+glycerol
+0.1
+0.0
-0.3
-0.2
+0.0
plant
Tuber-Atlantic
+0.1
-0.0
+0.1
-0.2
-0.3
carbon source
M9+sucrose
+0.4
-0.2
+0.1
+0.0
-0.5
plant
Tuber-Atlantic
-0.2
+0.1
+0.1
+0.1
-0.2
carbon source
M9+polygalacturonate
-0.2
+0.0
+0.3
+0.1
-0.4
carbon source
M9+glycerol
+0.4
-0.1
-0.2
+0.0
-0.2
carbon source
M9+polygalacturonate
-0.0
+0.4
+0.1
+0.0
-0.6
control
LB
-0.1
+0.2
-0.2
+0.2
-0.1
carbon source
M9+glycerol
+0.2
+0.3
-0.5
+0.2
-0.1
control
LB
+0.2
-0.1
+0.2
+0.1
-0.2
plant
Tuber-Atlantic
+0.6
-0.1
+0.3
+0.1
-0.5
plant
Tuber-Atlantic
+0.4
+0.4
-0.6
+0.3
-0.1
carbon source
M9+glycerol
+0.2
+0.5
-0.2
-0.1
+0.1
carbon source
M9+starch
+0.1
+0.7
-0.0
+0.3
-0.2
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