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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS14550 and HER17_RS14555 are separated by 22 nucleotides
HER17_RS14555 and HER17_RS14560 overlap by 4 nucleotides
HER17_RS14560 and HER17_RS14565 are separated by 66 nucleotides
HER17_RS14565 and HER17_RS14570 are separated by 1 nucleotides
HER17_RS14550: HER17_RS14550 - glycosyltransferase, at 3,273,195 to 3,274,223
_RS14550
HER17_RS14555: HER17_RS14555 - glycosyltransferase, at 3,274,246 to 3,275,433
_RS14555
HER17_RS14560: HER17_RS14560 - transferase, at 3,275,430 to 3,275,921
_RS14560
HER17_RS14565: HER17_RS14565 - oligosaccharide repeat unit polymerase, at 3,275,988 to 3,277,193
_RS14565
HER17_RS14570: HER17_RS14570 - glycosyltransferase, at 3,277,195 to 3,278,055
_RS14570
Group
Condition
HER17
_RS14550
HER17
_RS14555
HER17
_RS14560
HER17
_RS14565
HER17
_RS14570
plant
Tuber-Atlantic
-0.6
+0.3
-1.2
-1.7
-0.3
carbon source
M9+glycerol
-0.8
-0.2
-0.6
-0.8
-0.0
carbon source
M9+glycerol
-0.3
-0.3
-1.0
-0.1
-0.7
carbon source
M9+glycerol
-0.6
-0.4
-0.9
-0.1
-0.2
control
LB
-0.5
-0.7
-0.7
+0.3
-0.5
carbon source
M9+glycerol
-0.2
-0.0
-0.4
-0.7
-0.6
control
LB
-0.5
-0.0
-0.9
+0.4
-0.9
carbon source
M9+glycerol
-0.7
+0.2
-0.7
-0.1
-0.5
control
LB
+0.0
-0.7
-0.7
+0.5
-0.6
plant
Tuber-Atlantic
-0.9
+0.4
-0.1
-1.7
+1.1
control
LB
-0.5
+0.1
-0.4
+0.3
-0.3
control
LB
-0.3
+0.1
-0.3
+0.3
-0.5
control
LB
+0.0
+0.6
-1.2
+0.4
-0.6
carbon source
M9+starch
+0.4
-0.4
-0.4
-0.2
-0.0
plant
Tuber-Atlantic
+0.3
+0.4
-0.3
-1.2
+0.5
carbon source
M9+polygalacturonate
+0.0
-0.7
+0.2
+0.3
+0.1
carbon source
M9+starch
+0.3
+0.2
-0.6
-0.1
+0.4
carbon source
M9+polygalacturonate
+0.7
-0.0
-0.2
+0.2
-0.2
carbon source
M9+sucrose
+1.0
+0.3
-0.6
+0.1
+0.3
carbon source
M9+sucrose
+0.5
+0.3
+0.1
-0.3
+0.7
carbon source
M9+polygalacturonate
+0.6
+0.1
+0.3
+0.2
+0.2
carbon source
M9+starch
+0.6
+0.1
+0.4
+0.1
+0.8
carbon source
M9+sucrose
+0.2
+0.1
+0.8
+0.3
+1.0
carbon source
M9+glucose
+1.4
+1.1
+0.9
+0.2
+0.2
carbon source
M9+glucose
+1.5
+0.5
+0.8
+0.4
+1.2
carbon source
M9+glucose+arginine
+1.5
+0.8
+0.9
-0.1
+1.6
carbon source
M9+glucose
+1.7
+0.9
+1.0
+0.5
+0.7
carbon source
M9+glucose+arginine
+1.5
+1.2
+0.7
-0.1
+1.6
carbon source
M9+glucose+arginine
+1.5
+1.3
+1.1
+0.2
+1.4
plant
Tuber-Atlantic
+1.4
+2.3
+2.2
-0.4
+2.6
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HER17_RS14560
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