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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS14420 and HER17_RS14425 are separated by 80 nucleotides
HER17_RS14425 and HER17_RS14430 are separated by 830 nucleotides
HER17_RS14430 and HER17_RS14435 are separated by 102 nucleotides
HER17_RS14435 and HER17_RS14440 are separated by 113 nucleotides
HER17_RS14420: HER17_RS14420 - substrate-binding domain-containing protein, at 3,242,171 to 3,243,109
_RS14420
HER17_RS14425: HER17_RS14425 - inositol 2-dehydrogenase, at 3,243,190 to 3,244,176
_RS14425
HER17_RS14430: HER17_RS14430 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing), at 3,245,007 to 3,246,938
_RS14430
HER17_RS14435: HER17_RS14435 - hypothetical protein, at 3,247,041 to 3,247,301
_RS14435
HER17_RS14440: HER17_RS14440 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 3,247,415 to 3,248,926
_RS14440
Group
Condition
HER17
_RS14420
HER17
_RS14425
HER17
_RS14430
HER17
_RS14435
HER17
_RS14440
carbon source
M9+glucose
-0.1
+0.1
-0.0
-3.2
-0.2
plant
Tuber-Atlantic
-0.1
-0.6
-0.3
-3.0
+0.5
carbon source
M9+glucose+arginine
-0.2
-0.0
+0.1
-2.1
-0.3
plant
Tuber-Atlantic
-0.7
-0.4
+0.1
-1.3
-0.1
carbon source
M9+sucrose
-0.1
+0.1
-0.1
-1.9
+0.0
plant
Tuber-Atlantic
+0.1
-0.3
-0.1
-1.3
-0.0
carbon source
M9+glucose+arginine
-0.0
+0.3
-0.0
-1.1
-0.0
carbon source
M9+sucrose
-0.2
+0.1
-0.1
-0.8
+0.0
carbon source
M9+glucose
-0.1
+0.1
-0.1
-0.6
-0.1
plant
Tuber-Atlantic
+0.0
+0.1
-0.3
-0.9
+0.2
carbon source
M9+starch
-0.1
+0.1
-0.1
-0.7
-0.1
carbon source
M9+polygalacturonate
-0.1
-0.0
-0.1
-0.4
-0.1
carbon source
M9+glucose
-0.1
+0.2
+0.1
-0.6
-0.1
control
LB
+0.0
-0.3
+0.0
-0.1
+0.0
carbon source
M9+glycerol
+0.1
-0.1
+0.0
-0.2
-0.0
carbon source
M9+starch
-0.1
+0.1
+0.1
-0.3
-0.1
control
LB
+0.1
+0.1
-0.1
-0.3
+0.1
carbon source
M9+glycerol
+0.2
-0.1
-0.1
+0.1
-0.2
carbon source
M9+glycerol
+0.0
-0.1
-0.0
+0.1
-0.1
carbon source
M9+glucose+arginine
-0.1
+0.1
-0.1
+0.5
-0.3
carbon source
M9+glycerol
+0.1
-0.2
-0.0
+0.2
-0.1
carbon source
M9+glycerol
+0.1
-0.2
-0.2
+0.3
+0.1
carbon source
M9+polygalacturonate
-0.0
-0.0
+0.1
+0.3
-0.1
control
LB
+0.3
-0.0
+0.0
-0.1
+0.0
carbon source
M9+sucrose
+0.1
-0.1
-0.1
+0.2
+0.2
carbon source
M9+starch
-0.1
+0.2
+0.0
+0.5
-0.2
control
LB
+0.0
+0.1
+0.0
+0.1
+0.3
control
LB
+0.2
-0.1
-0.0
+0.6
+0.0
carbon source
M9+glycerol
+0.1
+0.0
-0.0
+0.7
-0.1
control
LB
+0.0
-0.0
-0.0
+0.6
+0.2
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HER17_RS14430
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