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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS14340 and HER17_RS14345 are separated by 183 nucleotides
HER17_RS14345 and HER17_RS14350 are separated by 441 nucleotides
HER17_RS14350 and HER17_RS14355 overlap by 1 nucleotides
HER17_RS14355 and HER17_RS14360 are separated by 94 nucleotides
HER17_RS14340: HER17_RS14340 - DUF1869 domain-containing protein, at 3,223,597 to 3,223,941
_RS14340
HER17_RS14345: HER17_RS14345 - sensor domain-containing diguanylate cyclase, at 3,224,125 to 3,225,189
_RS14345
HER17_RS14350: HER17_RS14350 - beta-glucoside-specific PTS transporter subunit IIABC, at 3,225,631 to 3,227,496
_RS14350
HER17_RS14355: HER17_RS14355 - family 1 glycosylhydrolase, at 3,227,496 to 3,228,959
_RS14355
HER17_RS14360: HER17_RS14360 - PRD domain-containing protein, at 3,229,054 to 3,229,893
_RS14360
Group
Condition
HER17
_RS14340
HER17
_RS14345
HER17
_RS14350
HER17
_RS14355
HER17
_RS14360
plant
Tuber-Atlantic
-1.2
-0.1
-0.1
-0.1
-0.1
carbon source
M9+glucose+arginine
-0.8
-0.2
-0.1
-0.1
-0.1
plant
Tuber-Atlantic
-1.2
+0.3
+0.1
-0.1
-0.1
carbon source
M9+glucose
-0.6
-0.1
-0.1
-0.3
+0.0
plant
Tuber-Atlantic
-1.0
+0.0
+0.1
-0.1
+0.0
carbon source
M9+polygalacturonate
-0.0
-0.3
-0.2
-0.2
+0.0
carbon source
M9+glucose
-0.3
-0.2
-0.2
-0.1
+0.1
control
LB
-0.6
-0.1
-0.0
-0.1
+0.2
control
LB
-0.3
+0.0
-0.1
-0.1
-0.0
control
LB
-0.4
-0.1
-0.0
-0.0
-0.0
carbon source
M9+glucose+arginine
-0.6
-0.0
+0.2
-0.3
+0.1
carbon source
M9+glucose+arginine
-0.1
-0.2
-0.4
-0.2
+0.3
carbon source
M9+glycerol
-0.2
-0.0
-0.1
+0.0
-0.0
carbon source
M9+glycerol
-0.3
+0.1
-0.0
-0.1
-0.1
carbon source
M9+glycerol
-0.2
-0.1
-0.0
-0.1
+0.1
carbon source
M9+polygalacturonate
-0.1
-0.1
+0.0
-0.1
+0.0
control
LB
-0.2
-0.0
-0.0
+0.0
+0.1
carbon source
M9+polygalacturonate
+0.2
-0.2
+0.1
-0.1
-0.0
carbon source
M9+glycerol
-0.2
-0.2
+0.0
+0.0
+0.1
carbon source
M9+sucrose
-0.0
-0.1
-0.1
+0.0
+0.0
carbon source
M9+sucrose
+0.4
+0.0
-0.1
-0.2
-0.2
carbon source
M9+starch
+0.2
-0.1
+0.0
-0.2
-0.0
carbon source
M9+glycerol
+0.0
+0.1
+0.1
-0.1
-0.1
control
LB
+0.2
-0.1
-0.0
-0.1
+0.0
carbon source
M9+sucrose
+0.5
-0.0
-0.1
-0.1
-0.0
carbon source
M9+starch
+0.4
-0.1
-0.0
-0.1
+0.1
carbon source
M9+starch
+0.6
-0.2
-0.0
-0.2
+0.1
carbon source
M9+glycerol
+0.5
+0.0
+0.0
-0.0
-0.1
carbon source
M9+glucose
+0.8
-0.2
-0.1
+0.1
-0.0
plant
Tuber-Atlantic
-0.0
+0.3
+0.4
-0.0
+0.2
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