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Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS13845 and HER17_RS13850 are separated by 15 nucleotides
HER17_RS13850 and HER17_RS13855 are separated by 52 nucleotides
HER17_RS13855 and HER17_RS13860 are separated by 36 nucleotides
HER17_RS13860 and HER17_RS13865 are separated by 353 nucleotides
HER17_RS13845: HER17_RS13845 - helix-turn-helix transcriptional regulator, at 3,101,141 to 3,101,545
_RS13845
HER17_RS13850: HER17_RS13850 - ArsR family transcriptional regulator, at 3,101,561 to 3,101,899
_RS13850
HER17_RS13855: HER17_RS13855 - threonine/serine dehydratase, at 3,101,952 to 3,102,956
_RS13855
HER17_RS13860: HER17_RS13860 - XRE family transcriptional regulator, at 3,102,993 to 3,103,295
_RS13860
HER17_RS13865: HER17_RS13865 - helix-turn-helix transcriptional regulator, at 3,103,649 to 3,104,089
_RS13865
Group
Condition
HER17
_RS13845
HER17
_RS13850
HER17
_RS13855
HER17
_RS13860
HER17
_RS13865
carbon source
M9+glucose+arginine
-0.6
-0.2
-0.4
-0.0
-0.0
control
LB
-0.2
-0.5
-0.1
-0.2
-0.1
carbon source
M9+sucrose
-0.2
-0.1
-0.0
-0.7
-0.1
carbon source
M9+glycerol
-0.3
+0.1
-0.1
-0.2
-0.2
carbon source
M9+polygalacturonate
-0.0
-0.3
-0.1
-0.2
+0.0
carbon source
M9+starch
-0.0
-0.1
-0.1
-0.1
-0.3
carbon source
M9+polygalacturonate
-0.2
-0.0
-0.1
-0.1
-0.1
carbon source
M9+glucose
-0.4
-0.1
-0.0
+0.1
-0.1
carbon source
M9+glycerol
-0.0
-0.1
-0.0
+0.0
-0.4
carbon source
M9+starch
+0.0
-0.0
-0.1
-0.2
-0.3
carbon source
M9+glucose
-0.3
-0.5
+0.0
+0.2
+0.2
carbon source
M9+glucose
+0.2
-0.4
-0.2
+0.0
+0.0
carbon source
M9+glucose+arginine
-0.2
+0.0
-0.2
+0.1
-0.1
control
LB
+0.1
-0.2
-0.1
-0.1
-0.0
plant
Tuber-Atlantic
-0.2
+0.4
+0.3
-0.9
+0.0
plant
Tuber-Atlantic
-0.3
-0.2
+0.2
+0.2
-0.1
carbon source
M9+starch
-0.1
-0.0
-0.1
-0.0
-0.0
carbon source
M9+glycerol
+0.2
+0.0
-0.1
-0.2
-0.0
carbon source
M9+sucrose
-0.1
-0.1
+0.0
-0.1
+0.1
control
LB
+0.2
-0.2
-0.1
+0.2
-0.1
carbon source
M9+glycerol
+0.2
-0.2
-0.1
+0.2
-0.1
carbon source
M9+glucose+arginine
-0.2
+0.0
-0.1
+0.3
+0.1
control
LB
+0.1
-0.2
-0.1
+0.4
+0.1
carbon source
M9+glycerol
+0.1
-0.0
-0.2
+0.4
-0.1
control
LB
+0.3
+0.0
-0.0
+0.1
-0.0
plant
Tuber-Atlantic
-0.7
+0.2
+0.6
+0.2
+0.1
control
LB
+0.2
+0.0
-0.0
+0.4
-0.3
carbon source
M9+glycerol
+0.5
+0.0
-0.1
+0.1
-0.1
carbon source
M9+sucrose
-0.0
-0.0
-0.1
+0.3
+0.2
plant
Tuber-Atlantic
-0.2
-0.3
+0.6
+0.5
+0.1
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