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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS13155 and HER17_RS13160 are separated by 56 nucleotides
HER17_RS13160 and HER17_RS13165 overlap by 1 nucleotides
HER17_RS13165 and HER17_RS13170 overlap by 11 nucleotides
HER17_RS13170 and HER17_RS13175 overlap by 4 nucleotides
HER17_RS13155: HER17_RS13155 - ferredoxin, at 2,920,166 to 2,920,462
_RS13155
HER17_RS13160: HER17_RS13160 - phage major tail tube protein, at 2,920,519 to 2,921,043
_RS13160
HER17_RS13165: HER17_RS13165 - phage tail sheath subtilisin-like domain-containing protein, at 2,921,043 to 2,922,470
_RS13165
HER17_RS13170: HER17_RS13170 - hypothetical protein, at 2,922,460 to 2,922,657
_RS13170
HER17_RS13175: HER17_RS13175 - Gp37 family protein, at 2,922,654 to 2,923,121
_RS13175
Group
Condition
HER17
_RS13155
HER17
_RS13160
HER17
_RS13165
HER17
_RS13170
HER17
_RS13175
carbon source
M9+sucrose
-0.3
-0.7
+0.0
-0.4
-0.5
carbon source
M9+glucose
+0.2
-0.2
-0.1
-0.8
-0.3
plant
Tuber-Atlantic
-0.2
-0.4
-0.0
-0.4
+0.5
carbon source
M9+sucrose
-0.1
+0.1
+0.0
-0.4
-0.1
carbon source
M9+glycerol
-0.3
+0.1
-0.1
-0.1
-0.1
plant
Tuber-Atlantic
-0.3
-0.3
+0.1
-0.3
+0.4
carbon source
M9+sucrose
+0.0
+0.0
-0.1
-0.2
-0.1
carbon source
M9+glucose+arginine
+0.0
-0.3
+0.4
-0.5
+0.1
carbon source
M9+glucose+arginine
-0.0
-0.0
+0.1
-0.0
-0.3
carbon source
M9+glycerol
+0.1
+0.2
-0.0
+0.0
-0.6
control
LB
-0.1
-0.1
+0.1
+0.1
-0.3
carbon source
M9+polygalacturonate
+0.0
-0.2
+0.1
-0.2
+0.1
carbon source
M9+starch
+0.0
+0.1
+0.1
+0.1
-0.4
carbon source
M9+starch
+0.4
-0.3
+0.1
+0.0
-0.3
control
LB
-0.1
+0.3
+0.1
-0.1
-0.2
carbon source
M9+polygalacturonate
-0.1
-0.2
+0.1
+0.1
+0.3
carbon source
M9+glycerol
-0.2
+0.2
-0.1
+0.1
+0.2
carbon source
M9+glycerol
+0.0
+0.2
+0.0
+0.1
-0.1
carbon source
M9+polygalacturonate
-0.1
+0.1
+0.1
+0.1
+0.0
carbon source
M9+glycerol
-0.1
+0.0
+0.1
+0.3
-0.0
carbon source
M9+glucose
+0.0
-0.2
+0.2
+0.3
+0.1
control
LB
-0.2
+0.3
+0.1
+0.3
+0.0
carbon source
M9+glucose+arginine
+0.2
-0.0
+0.1
+0.2
+0.0
control
LB
-0.1
+0.5
+0.0
+0.1
-0.1
carbon source
M9+glycerol
-0.1
+0.4
+0.1
+0.2
+0.0
control
LB
-0.1
+0.5
-0.1
+0.1
+0.3
carbon source
M9+glucose
-0.4
+0.6
+0.2
-0.1
+0.6
control
LB
+0.1
+0.5
+0.1
+0.2
+0.3
plant
Tuber-Atlantic
+0.7
+0.8
+0.2
-0.1
-0.2
plant
Tuber-Atlantic
+0.1
+0.5
+0.2
+1.1
+0.1
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