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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS13120 and HER17_RS13125 overlap by 4 nucleotides
HER17_RS13125 and HER17_RS13130 overlap by 13 nucleotides
HER17_RS13130 and HER17_RS13135 overlap by 11 nucleotides
HER17_RS13135 and HER17_RS13140 overlap by 1 nucleotides
HER17_RS13120: HER17_RS13120 - phage baseplate assembly protein V, at 2,914,082 to 2,914,663
_RS13120
HER17_RS13125: HER17_RS13125 - phage late control D family protein, at 2,914,660 to 2,915,820
_RS13125
HER17_RS13130: HER17_RS13130 - tail protein X, at 2,915,808 to 2,916,020
_RS13130
HER17_RS13135: HER17_RS13135 - phage tail protein, at 2,916,010 to 2,916,939
_RS13135
HER17_RS13140: HER17_RS13140 - phage tail tape measure protein, at 2,916,939 to 2,919,395
_RS13140
Group
Condition
HER17
_RS13120
HER17
_RS13125
HER17
_RS13130
HER17
_RS13135
HER17
_RS13140
carbon source
M9+glucose
-0.5
-0.1
-0.3
-0.1
-0.2
carbon source
M9+glucose
-0.3
-0.1
-0.0
-0.2
-0.1
carbon source
M9+starch
-0.1
+0.0
-0.5
-0.0
-0.1
carbon source
M9+glucose
-0.2
-0.1
-0.1
-0.1
-0.3
carbon source
M9+polygalacturonate
-0.2
-0.1
-0.0
-0.1
-0.2
carbon source
M9+glycerol
-0.1
+0.1
-0.7
+0.0
+0.1
carbon source
M9+starch
-0.1
+0.0
-0.4
-0.0
-0.1
control
LB
-0.1
+0.1
-0.2
-0.0
+0.0
carbon source
M9+sucrose
-0.2
+0.1
-0.2
+0.0
+0.0
carbon source
M9+polygalacturonate
-0.1
-0.0
+0.2
-0.2
-0.1
carbon source
M9+sucrose
+0.1
-0.1
-0.0
-0.1
-0.2
carbon source
M9+starch
-0.1
-0.1
+0.2
-0.2
-0.0
carbon source
M9+glycerol
+0.0
+0.2
-0.3
-0.1
-0.0
carbon source
M9+glucose+arginine
-0.1
+0.2
-0.0
-0.0
+0.1
plant
Tuber-Atlantic
+0.4
-0.2
-0.0
+0.2
-0.2
control
LB
+0.2
+0.2
-0.0
-0.2
-0.0
control
LB
+0.1
+0.1
+0.1
+0.1
-0.1
carbon source
M9+polygalacturonate
-0.1
+0.1
+0.0
+0.1
+0.0
carbon source
M9+glycerol
+0.1
+0.0
+0.0
-0.1
+0.1
control
LB
-0.0
+0.2
+0.0
+0.1
-0.1
carbon source
M9+glycerol
+0.1
+0.3
+0.0
-0.0
-0.1
carbon source
M9+glucose+arginine
-0.3
-0.1
+0.7
+0.1
-0.0
control
LB
+0.0
+0.0
+0.3
+0.0
+0.0
carbon source
M9+glycerol
+0.1
+0.2
+0.3
+0.0
-0.1
plant
Tuber-Atlantic
+0.2
+0.1
+0.3
+0.0
-0.1
control
LB
+0.0
+0.1
+0.4
+0.1
-0.1
plant
Tuber-Atlantic
+0.2
+0.1
+0.4
-0.1
-0.0
carbon source
M9+sucrose
+0.1
-0.0
+0.4
+0.1
+0.0
carbon source
M9+glucose+arginine
-0.1
+0.1
+0.5
+0.3
-0.1
plant
Tuber-Atlantic
+0.6
+0.1
+0.4
+0.5
+0.3
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