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Protein
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Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS11770 and HER17_RS11775 are separated by 54 nucleotides
HER17_RS11775 and HER17_RS11780 are separated by 171 nucleotides
HER17_RS11780 and HER17_RS11785 are separated by 399 nucleotides
HER17_RS11785 and HER17_RS11790 are separated by 384 nucleotides
HER17_RS11770: HER17_RS11770 - formate-dependent phosphoribosylglycinamide formyltransferase, at 2,615,251 to 2,616,429
_RS11770
HER17_RS11775: HER17_RS11775 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 2,616,484 to 2,617,125
_RS11775
HER17_RS11780: HER17_RS11780 - glucose-6-phosphate dehydrogenase, at 2,617,297 to 2,618,772
_RS11780
HER17_RS11785: HER17_RS11785 - MurR/RpiR family transcriptional regulator, at 2,619,172 to 2,620,041
_RS11785
HER17_RS11790: HER17_RS11790 - pyruvate kinase, at 2,620,426 to 2,621,868
_RS11790
Group
Condition
HER17
_RS11770
HER17
_RS11775
HER17
_RS11780
HER17
_RS11785
HER17
_RS11790
carbon source
M9+polygalacturonate
-0.2
-6.2
-1.4
-0.2
-0.1
carbon source
M9+polygalacturonate
+0.0
-6.5
-1.5
-0.2
-0.0
plant
Tuber-Atlantic
+0.0
-4.5
-0.8
-1.1
-0.4
carbon source
M9+polygalacturonate
-0.0
-5.2
-1.5
+0.0
+0.0
plant
Tuber-Atlantic
-0.3
-3.8
-0.7
-0.7
-0.8
plant
Tuber-Atlantic
-0.6
-3.6
-1.1
-1.0
+0.2
plant
Tuber-Atlantic
+0.1
-3.8
-1.2
-1.1
-0.1
carbon source
M9+starch
-0.3
-1.0
-0.7
-0.2
-0.0
carbon source
M9+starch
+0.0
-0.4
-0.4
-0.3
+0.1
carbon source
M9+sucrose
-0.1
-0.4
-0.4
-0.2
+0.1
carbon source
M9+starch
+0.0
-0.5
-0.5
-0.1
+0.2
control
LB
-0.0
-0.4
-0.2
+0.2
-0.3
carbon source
M9+glycerol
+0.0
+0.5
-0.6
-0.0
-0.5
carbon source
M9+glycerol
+0.0
-0.2
-0.2
+0.2
-0.5
control
LB
+0.0
+0.1
-0.2
-0.1
-0.4
carbon source
M9+glycerol
+0.1
+0.3
-0.4
+0.3
-0.4
carbon source
M9+glycerol
+0.1
+0.5
-0.3
-0.0
-0.4
carbon source
M9+glycerol
+0.0
+0.5
-0.3
+0.2
-0.5
control
LB
+0.1
+0.0
-0.2
+0.2
-0.2
carbon source
M9+glycerol
+0.3
+0.3
-0.3
+0.0
-0.3
carbon source
M9+sucrose
+0.0
-0.1
-0.2
+0.2
+0.1
control
LB
+0.2
+0.2
-0.1
-0.2
+0.0
control
LB
+0.0
+0.4
+0.1
-0.1
-0.2
carbon source
M9+sucrose
-0.2
+0.1
-0.1
+0.1
+0.4
carbon source
M9+glucose+arginine
+0.0
+0.4
+0.5
+0.2
+0.2
carbon source
M9+glucose
-0.0
-0.2
+0.4
+0.7
+0.7
carbon source
M9+glucose
-0.1
+0.1
+0.6
+0.5
+0.6
carbon source
M9+glucose
-0.2
+0.3
+0.5
+0.6
+0.8
carbon source
M9+glucose+arginine
-0.1
+0.5
+0.6
+0.8
+0.5
carbon source
M9+glucose+arginine
-0.0
+0.4
+0.7
+1.1
+0.5
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