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Cofit
Protein
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Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS11205 and HER17_RS11210 are separated by 255 nucleotides
HER17_RS11210 and HER17_RS11215 are separated by 97 nucleotides
HER17_RS11215 and HER17_RS11220 are separated by 230 nucleotides
HER17_RS11220 and HER17_RS11225 are separated by 194 nucleotides
HER17_RS11205: HER17_RS11205 - tagatose-bisphosphate aldolase, at 2,497,514 to 2,498,413
_RS11205
HER17_RS11210: HER17_RS11210 - SpoVR family protein, at 2,498,669 to 2,500,210
_RS11210
HER17_RS11215: HER17_RS11215 - fatty acid metabolism transcriptional regulator FadR, at 2,500,308 to 2,501,027
_RS11215
HER17_RS11220: HER17_RS11220 - sodium/proton antiporter NhaB, at 2,501,258 to 2,502,838
_RS11220
HER17_RS11225: HER17_RS11225 - disulfide bond formation protein DsbB, at 2,503,033 to 2,503,563
_RS11225
Group
Condition
HER17
_RS11205
HER17
_RS11210
HER17
_RS11215
HER17
_RS11220
HER17
_RS11225
carbon source
M9+glucose+arginine
+0.3
-0.9
-0.2
-0.2
-5.4
carbon source
M9+glucose
+0.0
-0.8
-0.2
+0.3
-5.8
carbon source
M9+glucose
+0.2
-1.0
+0.1
+0.1
-5.6
carbon source
M9+glucose+arginine
+0.4
-1.0
-0.2
-0.0
-5.4
carbon source
M9+glucose+arginine
+0.2
-0.9
+0.1
+0.0
-5.3
carbon source
M9+glucose
+0.6
-1.1
-0.0
+0.3
-5.3
carbon source
M9+sucrose
+0.1
+0.1
-0.2
+0.1
-5.1
carbon source
M9+sucrose
+0.4
+0.0
-0.1
-0.0
-4.8
carbon source
M9+sucrose
+0.4
-0.0
-0.0
+0.3
-4.8
carbon source
M9+polygalacturonate
+0.3
+0.2
-0.3
-0.0
-3.9
carbon source
M9+polygalacturonate
+0.3
+0.1
-0.3
+0.1
-3.4
carbon source
M9+polygalacturonate
+0.2
+0.1
-0.3
+0.2
-3.2
carbon source
M9+glycerol
-0.0
-0.1
-0.0
-0.0
-1.1
carbon source
M9+glycerol
+0.0
-0.0
+0.0
-0.0
-0.8
carbon source
M9+glycerol
-0.0
+0.1
-0.0
+0.1
-0.8
carbon source
M9+starch
+0.1
+0.1
-0.3
-0.3
-0.3
carbon source
M9+glycerol
-0.1
-0.0
-0.1
+0.1
-0.5
carbon source
M9+glycerol
+0.0
+0.1
+0.2
-0.0
-0.6
carbon source
M9+glycerol
+0.0
-0.4
+0.2
-0.1
-0.0
plant
Tuber-Atlantic
-0.2
+0.4
+0.2
+0.1
-0.5
control
LB
-0.2
-0.1
-0.0
-0.2
+0.4
control
LB
-0.2
-0.1
-0.2
+0.1
+0.4
control
LB
-0.0
+0.0
-0.4
-0.0
+0.4
carbon source
M9+starch
+0.2
+0.1
-0.2
+0.1
-0.2
control
LB
+0.2
-0.0
-0.3
-0.1
+0.3
control
LB
-0.1
-0.2
-0.0
+0.0
+0.6
control
LB
+0.0
-0.0
-0.2
+0.1
+0.5
plant
Tuber-Atlantic
+0.1
+0.0
-0.1
+0.5
+0.2
plant
Tuber-Atlantic
-0.4
-0.1
-0.2
+1.2
+0.4
plant
Tuber-Atlantic
-0.2
+0.2
+0.2
+0.4
+0.9
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