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Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS09645 and HER17_RS09650 are separated by 15 nucleotides
HER17_RS09650 and HER17_RS09655 are separated by 43 nucleotides
HER17_RS09655 and HER17_RS09660 are separated by 350 nucleotides
HER17_RS09660 and HER17_RS09665 are separated by 16 nucleotides
HER17_RS09645: HER17_RS09645 - YdbH family protein, at 2,126,772 to 2,129,363
_RS09645
HER17_RS09650: HER17_RS09650 - YnbE family lipoprotein, at 2,129,379 to 2,129,612
_RS09650
HER17_RS09655: HER17_RS09655 - FMN-dependent NADH-azoreductase, at 2,129,656 to 2,130,261
_RS09655
HER17_RS09660: HER17_RS09660 - ATP-dependent RNA helicase HrpA, at 2,130,612 to 2,134,454
_RS09660
HER17_RS09665: HER17_RS09665 - EcsC family protein, at 2,134,471 to 2,135,310
_RS09665
Group
Condition
HER17
_RS09645
HER17
_RS09650
HER17
_RS09655
HER17
_RS09660
HER17
_RS09665
plant
Tuber-Atlantic
-0.1
-0.9
-0.1
-0.0
+0.0
plant
Tuber-Atlantic
-0.2
-0.6
+0.1
-0.0
-0.1
control
LB
-0.1
-0.3
-0.1
-0.1
-0.3
carbon source
M9+glycerol
-0.1
-0.5
-0.1
-0.0
-0.0
control
LB
-0.0
-0.3
-0.1
-0.0
-0.1
plant
Tuber-Atlantic
+0.1
-0.2
-0.1
+0.1
-0.3
carbon source
M9+glycerol
-0.0
-0.3
+0.1
-0.1
-0.1
control
LB
+0.1
-0.2
+0.1
-0.1
-0.3
carbon source
M9+glucose
-0.2
+0.3
+0.1
-0.5
-0.1
carbon source
M9+glycerol
-0.0
-0.3
-0.2
-0.1
+0.2
carbon source
M9+glycerol
-0.1
-0.2
-0.1
-0.0
+0.0
carbon source
M9+polygalacturonate
+0.1
+0.1
-0.2
-0.1
-0.1
carbon source
M9+glucose+arginine
-0.1
+0.2
-0.0
-0.2
-0.1
control
LB
+0.1
-0.0
-0.1
-0.0
-0.1
control
LB
+0.2
-0.3
-0.0
-0.1
+0.1
carbon source
M9+glucose+arginine
-0.1
+0.2
-0.1
-0.2
+0.0
plant
Tuber-Atlantic
+0.2
-0.4
+0.2
-0.1
+0.1
carbon source
M9+glycerol
-0.0
-0.1
+0.2
+0.0
-0.1
control
LB
+0.2
-0.1
-0.0
-0.0
+0.0
carbon source
M9+sucrose
+0.1
+0.3
+0.1
-0.2
-0.1
carbon source
M9+glucose
+0.0
+0.2
+0.0
-0.1
-0.1
carbon source
M9+glycerol
+0.1
+0.1
-0.0
-0.1
+0.1
carbon source
M9+starch
+0.1
+0.2
+0.0
-0.1
-0.2
carbon source
M9+starch
+0.1
+0.4
+0.1
-0.2
-0.2
carbon source
M9+glucose
+0.0
+0.3
+0.1
-0.1
-0.0
carbon source
M9+glucose+arginine
+0.3
+0.1
+0.2
-0.3
+0.1
carbon source
M9+polygalacturonate
+0.2
+0.2
+0.0
-0.2
+0.1
carbon source
M9+polygalacturonate
+0.2
+0.3
+0.0
-0.2
+0.0
carbon source
M9+sucrose
+0.1
+0.3
-0.0
-0.2
+0.2
carbon source
M9+sucrose
+0.2
+0.4
+0.1
-0.1
+0.1
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