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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS09520 and HER17_RS09525 are separated by 90 nucleotides
HER17_RS09525 and HER17_RS09530 overlap by 1 nucleotides
HER17_RS09530 and HER17_RS09535 are separated by 92 nucleotides
HER17_RS09535 and HER17_RS09540 are separated by 144 nucleotides
HER17_RS09520: HER17_RS09520 - phage shock protein PspA, at 2,094,016 to 2,094,681
_RS09520
HER17_RS09525: HER17_RS09525 - envelope stress response membrane protein PspB, at 2,094,772 to 2,094,996
_RS09525
HER17_RS09530: HER17_RS09530 - envelope stress response membrane protein PspC, at 2,094,996 to 2,095,361
_RS09530
HER17_RS09535: HER17_RS09535 - hypothetical protein, at 2,095,454 to 2,096,008
_RS09535
HER17_RS09540: HER17_RS09540 - hypothetical protein, at 2,096,153 to 2,096,635
_RS09540
Group
Condition
HER17
_RS09520
HER17
_RS09525
HER17
_RS09530
HER17
_RS09535
HER17
_RS09540
carbon source
M9+glycerol
-1.1
-0.1
-0.3
-0.1
N.D.
carbon source
M9+glycerol
-0.7
-0.2
-0.0
+0.0
N.D.
carbon source
M9+glycerol
-0.4
-0.2
-0.1
-0.2
N.D.
carbon source
M9+polygalacturonate
-0.6
+0.1
-0.1
-0.3
N.D.
carbon source
M9+polygalacturonate
-0.7
+0.1
+0.0
-0.1
N.D.
carbon source
M9+sucrose
-0.7
+0.1
-0.1
+0.1
N.D.
control
LB
+0.0
-0.1
-0.2
-0.2
N.D.
control
LB
+0.5
-0.3
-0.5
-0.1
N.D.
carbon source
M9+glycerol
-0.2
-0.1
-0.0
+0.0
N.D.
carbon source
M9+glucose
-0.2
-0.1
-0.0
-0.0
N.D.
control
LB
+0.1
-0.1
-0.2
-0.0
N.D.
plant
Tuber-Atlantic
+0.5
+0.1
-0.3
-0.5
N.D.
plant
Tuber-Atlantic
-0.1
+0.0
-0.2
+0.1
N.D.
carbon source
M9+glycerol
-0.3
-0.1
+0.2
+0.1
N.D.
carbon source
M9+sucrose
-0.2
+0.2
+0.1
-0.2
N.D.
control
LB
+0.2
-0.1
-0.0
-0.1
N.D.
carbon source
M9+glucose+arginine
+0.4
-0.4
-0.3
+0.3
N.D.
plant
Tuber-Atlantic
-0.2
-0.0
+0.3
-0.1
N.D.
carbon source
M9+glycerol
-0.1
-0.0
+0.2
-0.0
N.D.
carbon source
M9+sucrose
-0.8
+0.4
+0.3
+0.1
N.D.
carbon source
M9+starch
-0.2
+0.1
+0.2
+0.1
N.D.
control
LB
+0.2
-0.1
-0.0
+0.1
N.D.
carbon source
M9+starch
-0.0
+0.4
+0.0
-0.0
N.D.
carbon source
M9+glucose+arginine
-0.2
+0.4
+0.1
+0.2
N.D.
carbon source
M9+polygalacturonate
-0.4
+0.6
+0.1
+0.2
N.D.
plant
Tuber-Atlantic
-0.1
+0.3
+0.1
+0.2
N.D.
control
LB
+0.4
-0.0
-0.0
+0.1
N.D.
carbon source
M9+glucose+arginine
-0.0
+0.4
+0.2
+0.0
N.D.
carbon source
M9+glucose
-0.2
+1.0
+0.3
-0.1
N.D.
carbon source
M9+glucose
+0.0
+0.3
+0.8
+0.1
N.D.
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HER17_RS09530
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