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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS08850 and HER17_RS08855 are separated by 21 nucleotides
HER17_RS08855 and HER17_RS08860 overlap by 8 nucleotides
HER17_RS08860 and HER17_RS08865 overlap by 4 nucleotides
HER17_RS08865 and HER17_RS08870 overlap by 4 nucleotides
HER17_RS08850: HER17_RS08850 - YdiU family protein, at 1,941,623 to 1,943,074
_RS08850
HER17_RS08855: HER17_RS08855 - heme ABC transporter ATP-binding protein, at 1,943,096 to 1,943,893
_RS08855
HER17_RS08860: HER17_RS08860 - iron ABC transporter permease, at 1,943,886 to 1,944,890
_RS08860
HER17_RS08865: HER17_RS08865 - hemin ABC transporter substrate-binding protein, at 1,944,887 to 1,945,705
_RS08865
HER17_RS08870: HER17_RS08870 - hemin-degrading factor, at 1,945,702 to 1,946,751
_RS08870
Group
Condition
HER17
_RS08850
HER17
_RS08855
HER17
_RS08860
HER17
_RS08865
HER17
_RS08870
carbon source
M9+glucose+arginine
-0.1
+0.0
-0.7
-0.3
-0.2
carbon source
M9+glucose
-0.2
-0.1
-0.0
-0.1
-0.4
carbon source
M9+glycerol
+0.0
-0.3
-0.1
-0.3
-0.2
carbon source
M9+glucose
+0.0
+0.3
-0.5
-0.4
-0.2
carbon source
M9+glycerol
+0.0
-0.0
-0.1
-0.4
-0.2
carbon source
M9+glucose+arginine
+0.1
-0.1
-0.2
-0.4
+0.0
carbon source
M9+glucose+arginine
+0.1
+0.1
-0.7
+0.1
-0.2
carbon source
M9+glucose
-0.2
+0.1
-0.2
+0.0
-0.1
carbon source
M9+sucrose
-0.0
-0.1
-0.1
+0.0
-0.2
carbon source
M9+sucrose
+0.0
+0.2
-0.2
-0.1
-0.2
carbon source
M9+glycerol
-0.1
-0.2
+0.1
-0.2
+0.1
carbon source
M9+polygalacturonate
+0.0
+0.2
-0.1
-0.3
-0.2
control
LB
-0.1
-0.3
+0.2
-0.1
+0.0
carbon source
M9+glycerol
-0.0
-0.1
+0.2
-0.3
-0.1
carbon source
M9+sucrose
+0.2
-0.0
-0.3
-0.0
-0.2
control
LB
+0.0
+0.0
+0.1
-0.1
-0.2
carbon source
M9+glycerol
-0.0
-0.2
+0.4
-0.2
-0.0
carbon source
M9+starch
+0.1
+0.2
-0.2
-0.0
-0.1
control
LB
+0.1
-0.3
+0.4
-0.1
-0.1
control
LB
-0.0
-0.4
+0.3
+0.0
+0.0
carbon source
M9+polygalacturonate
+0.0
+0.3
-0.2
+0.0
-0.1
control
LB
+0.1
-0.2
+0.2
+0.0
+0.1
plant
Tuber-Atlantic
+0.4
+0.0
-0.0
+0.1
-0.3
carbon source
M9+starch
+0.0
+0.3
-0.1
+0.1
+0.0
carbon source
M9+polygalacturonate
+0.1
+0.3
-0.1
+0.1
-0.0
carbon source
M9+starch
+0.0
+0.3
-0.0
+0.2
-0.0
plant
Tuber-Atlantic
-0.0
+0.4
+0.2
+0.2
-0.1
control
LB
+0.0
+0.2
+0.2
+0.1
+0.1
plant
Tuber-Atlantic
-0.1
-0.1
+0.5
+0.4
+0.1
plant
Tuber-Atlantic
+0.1
+0.5
-0.1
+0.3
+0.1
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HER17_RS08860
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