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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS08600 and HER17_RS08605 are separated by 184 nucleotides
HER17_RS08605 and HER17_RS08610 are separated by 61 nucleotides
HER17_RS08610 and HER17_RS08615 are separated by 594 nucleotides
HER17_RS08615 and HER17_RS08620 are separated by 77 nucleotides
HER17_RS08600: HER17_RS08600 - dihydroorotase, at 1,889,229 to 1,890,272
_RS08600
HER17_RS08605: HER17_RS08605 - antibiotic biosynthesis monooxygenase, at 1,890,457 to 1,890,744
_RS08605
HER17_RS08610: HER17_RS08610 - ribonuclease E, at 1,890,806 to 1,894,141
_RS08610
HER17_RS08615: HER17_RS08615 - 23S rRNA pseudouridine(955/2504/2580) synthase RluC, at 1,894,736 to 1,895,692
_RS08615
HER17_RS08620: HER17_RS08620 - Maf-like protein, at 1,895,770 to 1,896,354
_RS08620
Group
Condition
HER17
_RS08600
HER17
_RS08605
HER17
_RS08610
HER17
_RS08615
HER17
_RS08620
carbon source
M9+polygalacturonate
-5.0
-0.1
-0.1
-0.3
-0.1
carbon source
M9+polygalacturonate
-5.0
-0.1
-0.3
-0.1
-0.1
carbon source
M9+polygalacturonate
-4.9
-0.0
-0.3
-0.1
+0.1
carbon source
M9+glycerol
-4.9
+0.1
-0.1
-0.2
-0.1
carbon source
M9+glucose
-4.9
+0.3
-0.2
+0.3
-0.5
carbon source
M9+glycerol
-4.7
-0.2
+0.1
-0.0
-0.0
carbon source
M9+glucose
-4.5
-0.0
-0.5
+0.1
+0.1
carbon source
M9+sucrose
-4.2
+0.2
-0.4
-0.2
-0.0
carbon source
M9+starch
-4.2
-0.1
-0.1
-0.1
-0.1
carbon source
M9+glycerol
-4.5
+0.2
-0.3
-0.1
+0.1
carbon source
M9+starch
-3.9
-0.1
-0.5
-0.1
+0.0
carbon source
M9+sucrose
-4.3
+0.2
-0.3
-0.0
-0.1
carbon source
M9+glucose+arginine
-4.7
+0.1
+0.0
+0.1
-0.1
carbon source
M9+glucose+arginine
-4.5
-0.3
+0.5
+0.0
-0.2
carbon source
M9+glycerol
-4.5
+0.1
-0.2
-0.2
+0.3
carbon source
M9+glycerol
-4.2
+0.0
-0.2
-0.1
+0.1
carbon source
M9+glycerol
-4.0
-0.0
-0.1
-0.1
+0.1
carbon source
M9+glucose+arginine
-4.5
+0.0
+0.3
+0.1
-0.1
carbon source
M9+sucrose
-3.7
-0.2
-0.1
+0.1
-0.1
carbon source
M9+starch
-3.7
+0.0
-0.0
+0.0
-0.2
carbon source
M9+glucose
-4.5
+0.6
+0.0
+0.4
-0.2
plant
Tuber-Atlantic
-0.7
-0.5
-0.2
-0.4
-0.2
plant
Tuber-Atlantic
-0.5
-0.2
+0.2
-0.9
-0.1
plant
Tuber-Atlantic
-1.0
-0.5
+1.0
-0.7
-0.1
plant
Tuber-Atlantic
-0.8
-0.2
+0.2
-0.5
-0.0
control
LB
-0.2
-0.1
+0.2
-0.2
+0.1
control
LB
-0.1
-0.1
-0.1
-0.0
+0.2
control
LB
-0.1
+0.2
-0.1
-0.0
+0.3
control
LB
-0.0
-0.0
+0.2
-0.2
+0.2
control
LB
-0.0
-0.2
-0.2
+0.3
+0.3
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