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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS08435 and HER17_RS08440 are separated by 20 nucleotides
HER17_RS08440 and HER17_RS08445 are separated by 197 nucleotides
HER17_RS08445 and HER17_RS08450 are separated by 77 nucleotides
HER17_RS08450 and HER17_RS08455 are separated by 137 nucleotides
HER17_RS08435: HER17_RS08435 - YccS family putative transporter, at 1,859,421 to 1,861,556
_RS08435
HER17_RS08440: HER17_RS08440 - YccF domain-containing protein, at 1,861,577 to 1,862,023
_RS08440
HER17_RS08445: HER17_RS08445 - DNA helicase IV, at 1,862,221 to 1,864,278
_RS08445
HER17_RS08450: HER17_RS08450 - methylglyoxal synthase, at 1,864,356 to 1,864,814
_RS08450
HER17_RS08455: HER17_RS08455 - DUF2057 family protein, at 1,864,952 to 1,865,476
_RS08455
Group
Condition
HER17
_RS08435
HER17
_RS08440
HER17
_RS08445
HER17
_RS08450
HER17
_RS08455
carbon source
M9+glucose
-0.2
-0.4
-0.4
+0.2
-0.6
carbon source
M9+glucose+arginine
-0.3
+0.0
-0.2
-0.1
-0.7
carbon source
M9+glycerol
-0.2
-0.4
-0.1
-0.1
-0.2
carbon source
M9+glucose
-0.1
+0.2
-0.4
-0.0
-0.7
carbon source
M9+glucose+arginine
-0.3
-0.1
-0.1
+0.4
-0.7
carbon source
M9+glycerol
-0.1
-0.2
-0.0
-0.0
-0.3
carbon source
M9+glucose
-0.1
-0.1
-0.4
+0.5
-0.6
carbon source
M9+glycerol
-0.1
-0.1
-0.3
-0.0
-0.2
carbon source
M9+glucose+arginine
-0.2
+0.2
-0.1
-0.2
-0.4
carbon source
M9+glycerol
-0.0
-0.2
-0.0
+0.0
-0.1
carbon source
M9+polygalacturonate
-0.0
-0.1
-0.1
-0.1
-0.1
carbon source
M9+glycerol
+0.1
-0.2
+0.0
-0.0
-0.2
carbon source
M9+glycerol
-0.0
-0.1
-0.1
+0.1
-0.2
carbon source
M9+starch
-0.1
+0.1
-0.0
-0.0
-0.2
carbon source
M9+sucrose
-0.1
+0.1
-0.2
+0.1
-0.1
carbon source
M9+sucrose
-0.1
+0.0
-0.1
+0.2
-0.2
carbon source
M9+sucrose
-0.0
+0.1
-0.1
+0.0
-0.1
carbon source
M9+polygalacturonate
-0.1
-0.3
+0.2
+0.1
+0.1
control
LB
-0.0
+0.1
+0.0
-0.1
-0.0
control
LB
-0.1
+0.0
+0.0
+0.1
-0.2
carbon source
M9+starch
-0.1
-0.1
-0.0
+0.2
-0.1
plant
Tuber-Atlantic
-0.1
-0.1
+0.3
-0.2
+0.1
control
LB
+0.1
+0.0
+0.0
+0.0
-0.2
control
LB
+0.0
+0.0
-0.1
+0.1
+0.0
carbon source
M9+starch
-0.0
+0.1
-0.0
+0.3
-0.3
carbon source
M9+polygalacturonate
-0.0
+0.3
-0.0
-0.1
-0.0
control
LB
+0.0
+0.0
+0.1
+0.1
-0.1
plant
Tuber-Atlantic
+0.2
+0.6
+0.2
+0.2
+0.1
plant
Tuber-Atlantic
+0.3
+0.6
+0.3
-0.1
+0.1
plant
Tuber-Atlantic
+0.2
-0.2
+0.5
+0.6
+0.2
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