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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS08265 and HER17_RS08270 overlap by 1 nucleotides
HER17_RS08270 and HER17_RS08275 overlap by 8 nucleotides
HER17_RS08275 and HER17_RS08280 overlap by 4 nucleotides
HER17_RS08280 and HER17_RS08285 are separated by 260 nucleotides
HER17_RS08265: HER17_RS08265 - flagellum-specific ATP synthase FliI, at 1,820,795 to 1,822,165
_RS08265
HER17_RS08270: HER17_RS08270 - flagellar assembly protein FliH, at 1,822,165 to 1,822,887
_RS08270
HER17_RS08275: HER17_RS08275 - flagellar motor switch protein FliG, at 1,822,880 to 1,823,872
_RS08275
HER17_RS08280: HER17_RS08280 - flagellar M-ring protein FliF, at 1,823,869 to 1,825,593
_RS08280
HER17_RS08285: HER17_RS08285 - flagellar hook-basal body complex protein FliE, at 1,825,854 to 1,826,168
_RS08285
Group
Condition
HER17
_RS08265
HER17
_RS08270
HER17
_RS08275
HER17
_RS08280
HER17
_RS08285
control
LB
-0.6
-0.7
-0.9
-0.4
-0.9
control
LB
-0.4
-0.6
-0.3
-0.3
-1.3
control
LB
-0.5
-0.7
-0.4
-0.3
-0.6
control
LB
-0.1
-0.1
-0.4
-0.0
-0.9
control
LB
-0.4
-0.3
-0.2
-0.1
-0.4
control
LB
-0.1
-0.3
-0.1
-0.2
-0.4
plant
Tuber-Atlantic
-0.4
+0.8
-0.5
+0.2
-0.9
plant
Tuber-Atlantic
+0.1
+0.5
-0.0
-0.1
-0.9
carbon source
M9+glycerol
+0.3
+0.2
+0.3
+0.3
-0.1
carbon source
M9+glycerol
+0.2
+0.2
+0.3
+0.3
+0.1
carbon source
M9+glycerol
+0.3
+0.2
+0.2
+0.4
+0.2
carbon source
M9+starch
+0.5
+0.4
+0.4
+0.5
+0.0
carbon source
M9+glycerol
+0.3
+0.4
+0.4
+0.5
+0.4
carbon source
M9+starch
+0.5
+0.5
+0.4
+0.4
+0.1
carbon source
M9+glycerol
+0.6
+0.4
+0.6
+0.6
+0.2
carbon source
M9+starch
+0.6
+0.6
+0.6
+0.6
+0.4
carbon source
M9+glucose
+0.7
+0.7
+0.8
+0.8
+0.4
carbon source
M9+sucrose
+0.8
+0.7
+0.8
+0.8
+0.2
carbon source
M9+glycerol
+0.8
+0.6
+0.7
+0.7
+0.4
carbon source
M9+polygalacturonate
+0.8
+0.8
+0.8
+0.9
+0.1
carbon source
M9+sucrose
+0.7
+0.6
+0.6
+0.7
+1.1
carbon source
M9+glucose
+0.6
+0.8
+0.7
+0.6
+0.9
carbon source
M9+sucrose
+0.7
+0.8
+0.7
+0.7
+0.8
carbon source
M9+glucose
+0.7
+0.8
+0.7
+0.6
+0.9
carbon source
M9+polygalacturonate
+1.0
+1.0
+0.8
+1.0
+0.7
carbon source
M9+glucose+arginine
+1.2
+1.2
+0.9
+1.1
+0.4
carbon source
M9+polygalacturonate
+1.0
+1.0
+0.8
+1.0
+1.0
carbon source
M9+glucose+arginine
+1.1
+1.0
+1.1
+0.9
+0.9
carbon source
M9+glucose+arginine
+1.1
+1.0
+0.9
+1.0
+1.3
plant
Tuber-Atlantic
+1.0
+1.3
+0.5
+0.7
+3.2
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