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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS06705 and HER17_RS06710 overlap by 4 nucleotides
HER17_RS06710 and HER17_RS06715 overlap by 1 nucleotides
HER17_RS06715 and HER17_RS06720 overlap by 4 nucleotides
HER17_RS06720 and HER17_RS06725 overlap by 4 nucleotides
HER17_RS06705: HER17_RS06705 - type II secretion system minor pseudopilin GspH, at 1,493,884 to 1,494,450
_RS06705
HER17_RS06710: HER17_RS06710 - type II secretion system minor pseudopilin GspI, at 1,494,447 to 1,494,812
_RS06710
HER17_RS06715: HER17_RS06715 - type II secretion system minor pseudopilin GspJ, at 1,494,812 to 1,495,462
_RS06715
HER17_RS06720: HER17_RS06720 - type II secretion system minor pseudopilin GspK, at 1,495,459 to 1,496,445
_RS06720
HER17_RS06725: HER17_RS06725 - type II secretion system protein GspL, at 1,496,442 to 1,497,719
_RS06725
Group
Condition
HER17
_RS06705
HER17
_RS06710
HER17
_RS06715
HER17
_RS06720
HER17
_RS06725
plant
Tuber-Atlantic
-0.2
-1.7
+0.2
+0.3
-0.4
carbon source
M9+glycerol
-0.1
-0.4
-0.0
+0.0
-0.2
control
LB
+0.0
-0.4
-0.0
-0.1
-0.3
carbon source
M9+polygalacturonate
-0.3
+0.0
-0.4
+0.0
-0.0
carbon source
M9+sucrose
+0.1
-0.5
-0.2
+0.1
+0.0
carbon source
M9+glucose
-0.2
+0.0
+0.0
-0.0
-0.4
carbon source
M9+polygalacturonate
-0.1
+0.0
-0.2
-0.1
-0.1
control
LB
-0.0
-0.0
-0.0
-0.3
-0.2
carbon source
M9+sucrose
-0.1
-0.3
-0.1
+0.1
+0.1
carbon source
M9+polygalacturonate
-0.2
-0.0
-0.2
+0.0
+0.1
control
LB
+0.0
-0.1
-0.1
-0.0
-0.1
carbon source
M9+glucose
-0.1
-0.4
-0.0
+0.1
+0.1
carbon source
M9+starch
-0.2
+0.1
-0.4
+0.2
+0.0
carbon source
M9+glucose+arginine
+0.2
-0.3
-0.0
+0.2
-0.2
carbon source
M9+glucose
-0.1
-0.3
-0.2
+0.1
+0.4
control
LB
+0.2
+0.1
-0.2
+0.0
-0.2
carbon source
M9+glucose+arginine
+0.0
-0.1
-0.2
+0.2
+0.0
control
LB
+0.1
-0.0
+0.1
-0.2
-0.0
carbon source
M9+starch
-0.1
+0.2
-0.3
+0.1
+0.1
carbon source
M9+glycerol
+0.0
+0.2
-0.1
-0.1
-0.1
carbon source
M9+glycerol
+0.1
+0.1
-0.0
-0.1
-0.0
plant
Tuber-Atlantic
+0.0
-0.3
+0.1
+0.0
+0.3
control
LB
-0.1
+0.1
+0.0
-0.0
+0.1
carbon source
M9+glucose+arginine
-0.0
+0.2
-0.1
+0.1
-0.1
carbon source
M9+starch
-0.0
+0.2
+0.0
+0.1
-0.0
carbon source
M9+glycerol
+0.2
+0.3
+0.0
-0.1
-0.2
carbon source
M9+glycerol
+0.2
+0.0
-0.1
+0.0
+0.1
carbon source
M9+sucrose
-0.2
-0.1
+0.2
+0.1
+0.3
plant
Tuber-Atlantic
-0.0
-0.3
+0.2
+0.3
+0.2
plant
Tuber-Atlantic
+0.6
+0.1
+0.2
+0.1
+0.2
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HER17_RS06715
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