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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS06040 and HER17_RS06045 are separated by 21 nucleotides
HER17_RS06045 and HER17_RS06050 are separated by 212 nucleotides
HER17_RS06050 and HER17_RS06055 are separated by 52 nucleotides
HER17_RS06055 and HER17_RS06060 are separated by 150 nucleotides
HER17_RS06040: HER17_RS06040 - ISC system 2Fe-2S type ferredoxin, at 1,341,262 to 1,341,597
_RS06040
HER17_RS06045: HER17_RS06045 - Fe-S cluster assembly protein IscX, at 1,341,619 to 1,341,819
_RS06045
HER17_RS06050: HER17_RS06050 - aminopeptidase PepB, at 1,342,032 to 1,343,339
_RS06050
HER17_RS06055: HER17_RS06055 - enhanced serine sensitivity protein SseB, at 1,343,392 to 1,344,186
_RS06055
HER17_RS06060: HER17_RS06060 - MurR/RpiR family transcriptional regulator, at 1,344,337 to 1,345,125
_RS06060
Group
Condition
HER17
_RS06040
HER17
_RS06045
HER17
_RS06050
HER17
_RS06055
HER17
_RS06060
carbon source
M9+polygalacturonate
-0.0
-1.0
-0.2
-0.2
-0.3
carbon source
M9+glucose
-0.1
-0.9
-0.8
+0.4
+0.0
carbon source
M9+glucose
+0.2
-1.1
-0.8
+0.4
-0.1
carbon source
M9+glucose+arginine
-0.5
+0.3
-0.7
+0.0
-0.4
carbon source
M9+starch
-0.8
-0.0
-0.1
-0.0
-0.3
control
LB
-0.8
-0.6
-0.0
+0.1
+0.2
plant
Tuber-Atlantic
+0.1
-0.3
-0.3
-0.6
+0.1
plant
Tuber-Atlantic
-0.5
+1.2
-0.2
-0.7
-0.6
carbon source
M9+glucose+arginine
-0.4
-0.6
-0.6
+0.9
-0.1
carbon source
M9+sucrose
-0.3
-0.3
-0.0
+0.2
-0.2
carbon source
M9+glucose
+0.3
+0.1
-0.7
+0.2
-0.5
carbon source
M9+polygalacturonate
-0.2
-0.2
-0.2
+0.1
-0.2
carbon source
M9+polygalacturonate
+0.2
-0.5
-0.2
-0.1
-0.1
carbon source
M9+glucose+arginine
+0.3
-0.6
-0.7
+0.5
-0.0
control
LB
-0.6
+0.3
-0.0
-0.1
+0.0
carbon source
M9+glycerol
-0.8
+0.4
+0.1
+0.1
-0.1
carbon source
M9+starch
-0.2
+0.3
-0.3
+0.0
-0.2
carbon source
M9+starch
+0.2
-0.0
+0.1
-0.2
-0.1
plant
Tuber-Atlantic
+0.4
+0.2
-0.5
+0.2
-0.4
carbon source
M9+sucrose
-0.3
+0.2
-0.1
+0.0
+0.1
carbon source
M9+glycerol
-0.6
+0.3
-0.0
+0.1
+0.2
carbon source
M9+sucrose
+0.3
-0.0
+0.0
+0.1
-0.1
control
LB
+0.2
+0.8
-0.1
-0.2
-0.2
carbon source
M9+glycerol
-0.2
+0.3
+0.1
+0.4
+0.0
control
LB
+0.4
+0.6
-0.2
-0.2
+0.1
carbon source
M9+glycerol
+0.3
+0.0
+0.1
+0.3
+0.2
control
LB
+0.5
+0.4
+0.1
+0.0
+0.0
carbon source
M9+glycerol
+0.2
+0.6
+0.0
+0.3
+0.0
plant
Tuber-Atlantic
+1.0
+0.8
-0.2
-0.1
-0.4
carbon source
M9+glycerol
+0.1
+0.5
+0.2
+0.6
+0.2
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