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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS05845 and HER17_RS05850 are separated by 787 nucleotides
HER17_RS05850 and HER17_RS05855 are separated by 41 nucleotides
HER17_RS05855 and HER17_RS05860 overlap by 14 nucleotides
HER17_RS05860 and HER17_RS05865 are separated by 78 nucleotides
HER17_RS05845: HER17_RS05845 - cyclic-guanylate-specific phosphodiesterase, at 1,279,989 to 1,280,780
_RS05845
HER17_RS05850: HER17_RS05850 - sensor domain-containing diguanylate cyclase, at 1,281,568 to 1,283,082
_RS05850
HER17_RS05855: HER17_RS05855 - HlyD family type I secretion periplasmic adaptor subunit, at 1,283,124 to 1,284,485
_RS05855
HER17_RS05860: HER17_RS05860 - type I secretion system permease/ATPase, at 1,284,472 to 1,286,769
_RS05860
HER17_RS05865: HER17_RS05865 - TolC family outer membrane protein, at 1,286,848 to 1,288,200
_RS05865
Group
Condition
HER17
_RS05845
HER17
_RS05850
HER17
_RS05855
HER17
_RS05860
HER17
_RS05865
carbon source
M9+polygalacturonate
-0.0
-1.0
-0.7
-0.5
-0.2
carbon source
M9+polygalacturonate
-0.3
-1.1
-0.3
-0.4
-0.2
carbon source
M9+polygalacturonate
+0.2
-1.0
-0.5
-0.4
-0.3
carbon source
M9+glucose
+0.6
-0.7
-0.5
-0.8
-0.3
carbon source
M9+glucose+arginine
+0.5
-0.5
-0.6
-0.5
-0.3
carbon source
M9+glucose
+0.5
-0.5
-0.5
-0.3
-0.5
carbon source
M9+glucose+arginine
+0.5
-0.7
-0.4
-0.2
-0.3
carbon source
M9+glucose+arginine
+0.8
-0.6
-0.6
-0.3
-0.5
carbon source
M9+starch
-0.1
-0.5
-0.2
-0.1
-0.1
carbon source
M9+glucose
+0.3
-0.6
-0.3
-0.2
-0.3
carbon source
M9+starch
+0.1
-0.4
-0.2
-0.2
-0.3
carbon source
M9+starch
+0.1
-0.4
-0.2
-0.2
-0.2
carbon source
M9+sucrose
+0.6
-0.6
-0.3
-0.2
-0.2
carbon source
M9+sucrose
+0.5
-0.5
-0.3
-0.2
-0.1
carbon source
M9+sucrose
+0.4
-0.4
-0.1
-0.2
-0.2
control
LB
-0.4
-0.1
+0.1
+0.0
+0.1
control
LB
-0.2
-0.2
+0.1
+0.2
+0.2
control
LB
-0.3
-0.2
+0.1
+0.3
+0.1
carbon source
M9+glycerol
-0.4
+0.1
+0.2
+0.2
+0.2
control
LB
+0.0
-0.2
+0.3
+0.0
+0.2
control
LB
-0.2
-0.0
+0.2
+0.2
+0.1
carbon source
M9+glycerol
-0.2
+0.1
+0.1
+0.2
+0.2
plant
Tuber-Atlantic
-0.5
+0.0
+0.1
+0.2
+0.5
carbon source
M9+glycerol
-0.3
+0.1
+0.2
+0.2
+0.1
carbon source
M9+glycerol
-0.2
+0.1
+0.2
+0.1
+0.2
carbon source
M9+glycerol
-0.0
+0.1
+0.2
+0.1
+0.3
carbon source
M9+glycerol
-0.0
+0.0
+0.3
+0.3
+0.3
plant
Tuber-Atlantic
-0.4
+0.5
+0.5
+0.2
+0.8
plant
Tuber-Atlantic
+1.5
+0.0
+0.1
+0.2
+0.4
plant
Tuber-Atlantic
-0.1
+1.0
+1.0
+1.0
+0.9
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HER17_RS05855
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