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Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS03390 and HER17_RS03395 are separated by 56 nucleotides
HER17_RS03395 and HER17_RS03400 are separated by 437 nucleotides
HER17_RS03400 and HER17_RS03405 are separated by 11 nucleotides
HER17_RS03405 and HER17_RS03410 are separated by 85 nucleotides
HER17_RS03390: HER17_RS03390 - LacI family DNA-binding transcriptional regulator, at 770,896 to 772,086
_RS03390
HER17_RS03395: HER17_RS03395 - ABC transporter substrate-binding protein, at 772,143 to 773,204
_RS03395
HER17_RS03400: HER17_RS03400 - multidrug efflux SMR transporter, at 773,642 to 773,968
_RS03400
HER17_RS03405: HER17_RS03405 - multidrug efflux SMR transporter, at 773,980 to 774,402
_RS03405
HER17_RS03410: HER17_RS03410 - choline TMA-lyase-activating enzyme, at 774,488 to 775,438
_RS03410
Group
Condition
HER17
_RS03390
HER17
_RS03395
HER17
_RS03400
HER17
_RS03405
HER17
_RS03410
plant
Tuber-Atlantic
-0.6
-0.1
-0.6
-0.0
+0.1
control
LB
-0.4
+0.0
-0.7
-0.1
+0.1
control
LB
-0.5
-0.1
-0.1
-0.2
-0.0
carbon source
M9+glucose+arginine
-0.1
-0.1
+0.3
-0.8
-0.2
carbon source
M9+glucose+arginine
-0.1
+0.4
+0.5
-1.4
-0.1
carbon source
M9+glycerol
+0.1
-0.0
+0.2
-1.0
-0.0
carbon source
M9+glycerol
-0.1
+0.1
-0.3
-0.2
-0.1
control
LB
-0.4
-0.1
-0.0
-0.2
-0.0
carbon source
M9+sucrose
-0.1
+0.1
+0.1
-0.6
+0.1
control
LB
-0.5
+0.0
+0.3
-0.3
-0.1
carbon source
M9+glucose
-0.3
+0.1
+0.4
-0.8
-0.0
plant
Tuber-Atlantic
-0.4
-0.1
-0.3
+0.4
-0.0
control
LB
-0.4
+0.0
-0.2
+0.2
+0.0
carbon source
M9+glucose
+0.2
+0.1
+0.6
-1.3
+0.1
carbon source
M9+starch
-0.3
-0.0
+0.2
+0.1
-0.1
control
LB
-0.1
-0.1
+0.1
+0.1
-0.0
carbon source
M9+polygalacturonate
+0.2
+0.2
+0.1
-0.4
+0.0
carbon source
M9+sucrose
-0.0
+0.1
+0.1
-0.1
+0.1
carbon source
M9+glycerol
-0.0
+0.2
+0.1
-0.2
+0.0
carbon source
M9+glycerol
+0.2
-0.1
+0.2
-0.1
+0.0
carbon source
M9+glycerol
+0.1
+0.1
+0.3
-0.2
+0.0
carbon source
M9+starch
-0.1
-0.0
+0.2
+0.2
+0.0
carbon source
M9+glucose+arginine
+0.2
-0.0
-0.1
+0.3
-0.0
carbon source
M9+starch
+0.0
-0.0
+0.3
+0.1
+0.1
carbon source
M9+glycerol
+0.0
+0.0
+0.4
+0.2
+0.0
carbon source
M9+polygalacturonate
+0.2
+0.0
+0.4
-0.0
+0.1
carbon source
M9+glucose
-0.1
+0.4
+0.2
+0.5
-0.1
carbon source
M9+polygalacturonate
+0.3
-0.1
+0.2
+0.5
+0.0
plant
Tuber-Atlantic
-0.2
-0.2
-0.2
+1.6
+0.0
plant
Tuber-Atlantic
+0.0
+0.3
+0.8
-0.6
+0.7
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HER17_RS03400
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