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Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS02295 and HER17_RS02300 are separated by 48 nucleotides
HER17_RS02300 and HER17_RS02305 are separated by 272 nucleotides
HER17_RS02305 and HER17_RS02310 are separated by 316 nucleotides
HER17_RS02310 and HER17_RS02315 are separated by 512 nucleotides
HER17_RS02295: HER17_RS02295 - isocitrate lyase, at 508,740 to 510,047
_RS02295
HER17_RS02300: HER17_RS02300 - bifunctional isocitrate dehydrogenase kinase/phosphatase, at 510,096 to 511,871
_RS02300
HER17_RS02305: HER17_RS02305 - glyoxylate bypass operon transcriptional repressor IclR, at 512,144 to 512,974
_RS02305
HER17_RS02310: HER17_RS02310 - methionine synthase, at 513,291 to 516,974
_RS02310
HER17_RS02315: HER17_RS02315 - AraC family transcriptional regulator, at 517,487 to 518,443
_RS02315
Group
Condition
HER17
_RS02295
HER17
_RS02300
HER17
_RS02305
HER17
_RS02310
HER17
_RS02315
carbon source
M9+glucose
+0.1
-0.0
-0.7
+0.1
-0.0
carbon source
M9+glucose+arginine
-0.3
-0.1
-0.3
-0.0
+0.2
carbon source
M9+sucrose
-0.0
-0.0
-0.2
-0.0
-0.2
carbon source
M9+glucose+arginine
-0.1
+0.0
-0.4
-0.1
+0.2
carbon source
M9+glucose
-0.0
+0.0
-0.6
+0.1
+0.1
carbon source
M9+glucose
+0.0
-0.0
-0.5
+0.1
+0.1
carbon source
M9+glycerol
+0.0
+0.0
-0.1
-0.1
-0.1
carbon source
M9+glucose+arginine
+0.1
+0.1
-0.4
+0.0
-0.0
plant
Tuber-Atlantic
+0.1
-0.0
-0.1
-0.1
-0.0
control
LB
+0.1
+0.0
-0.2
+0.0
-0.1
control
LB
+0.0
+0.0
-0.2
-0.0
+0.1
control
LB
-0.1
+0.0
-0.0
+0.0
-0.0
carbon source
M9+polygalacturonate
-0.0
+0.1
+0.0
-0.1
-0.0
control
LB
+0.0
+0.0
-0.1
-0.0
-0.0
carbon source
M9+starch
-0.0
+0.0
-0.0
+0.0
-0.0
carbon source
M9+glycerol
+0.1
+0.1
-0.1
-0.1
+0.1
control
LB
-0.0
+0.0
-0.1
+0.0
+0.1
carbon source
M9+sucrose
-0.1
-0.1
-0.0
+0.1
+0.1
carbon source
M9+starch
-0.0
-0.1
+0.1
-0.0
+0.1
carbon source
M9+sucrose
+0.0
+0.0
-0.1
+0.1
+0.1
carbon source
M9+glycerol
+0.2
+0.0
+0.0
-0.1
+0.0
carbon source
M9+glycerol
+0.1
+0.1
-0.0
-0.0
+0.0
carbon source
M9+glycerol
+0.1
+0.1
-0.1
-0.1
+0.2
carbon source
M9+glycerol
-0.0
+0.2
-0.0
-0.1
+0.2
plant
Tuber-Atlantic
+0.2
+0.1
-0.2
-0.0
+0.3
carbon source
M9+polygalacturonate
+0.2
+0.0
+0.1
+0.0
-0.0
carbon source
M9+polygalacturonate
+0.0
-0.0
+0.2
-0.0
+0.2
plant
Tuber-Atlantic
+0.3
-0.0
-0.2
-0.2
+0.5
control
LB
+0.2
+0.1
+0.0
+0.0
+0.3
plant
Tuber-Atlantic
+0.2
-0.0
+0.3
-0.1
+0.3
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