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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS00695 and HER17_RS00700 are separated by 59 nucleotides
HER17_RS00700 and HER17_RS00705 overlap by 4 nucleotides
HER17_RS00705 and HER17_RS00710 overlap by 4 nucleotides
HER17_RS00710 and HER17_RS00715 are separated by 299 nucleotides
HER17_RS00695: HER17_RS00695 - AAA family ATPase, at 160,837 to 161,946
_RS00695
HER17_RS00700: HER17_RS00700 - DUF5682 family protein, at 162,006 to 164,567
_RS00700
HER17_RS00705: HER17_RS00705 - VWA domain-containing protein, at 164,564 to 165,715
_RS00705
HER17_RS00710: HER17_RS00710 - SWIM zinc finger domain-containing protein, at 165,712 to 167,784
_RS00710
HER17_RS00715: HER17_RS00715 - sugar transporter, at 168,084 to 169,271
_RS00715
Group
Condition
HER17
_RS00695
HER17
_RS00700
HER17
_RS00705
HER17
_RS00710
HER17
_RS00715
carbon source
M9+glucose+arginine
-0.2
-0.0
-0.1
-0.0
+0.1
carbon source
M9+glycerol
-0.2
-0.0
-0.1
+0.1
-0.1
control
LB
-0.2
+0.0
+0.0
-0.0
-0.1
carbon source
M9+starch
-0.2
+0.0
-0.1
+0.0
+0.0
plant
Tuber-Atlantic
-0.2
+0.0
+0.0
-0.1
+0.1
carbon source
M9+glycerol
-0.2
+0.1
+0.0
+0.0
-0.0
plant
Tuber-Atlantic
-0.0
-0.0
+0.0
-0.1
+0.1
control
LB
+0.0
+0.0
-0.2
+0.1
+0.1
carbon source
M9+glucose+arginine
-0.2
-0.1
+0.2
-0.0
+0.2
control
LB
-0.1
+0.1
+0.1
-0.0
-0.1
carbon source
M9+polygalacturonate
-0.1
+0.1
+0.1
-0.0
+0.1
carbon source
M9+glycerol
+0.0
+0.1
+0.1
+0.0
-0.1
carbon source
M9+polygalacturonate
-0.1
+0.0
-0.0
+0.1
+0.1
carbon source
M9+glycerol
-0.2
+0.1
+0.0
+0.2
-0.0
carbon source
M9+polygalacturonate
+0.0
-0.1
-0.0
-0.0
+0.2
control
LB
-0.0
+0.0
-0.0
+0.1
+0.1
carbon source
M9+glucose
-0.5
+0.1
+0.1
+0.1
+0.3
carbon source
M9+glucose+arginine
+0.0
+0.1
+0.2
-0.1
+0.0
control
LB
-0.0
-0.0
+0.1
+0.0
+0.1
carbon source
M9+sucrose
+0.1
+0.0
-0.0
+0.1
-0.0
carbon source
M9+glycerol
+0.1
+0.1
-0.2
+0.1
+0.1
control
LB
+0.1
+0.0
+0.1
+0.0
-0.1
carbon source
M9+starch
-0.1
-0.0
+0.2
+0.1
+0.1
carbon source
M9+starch
-0.1
-0.0
+0.1
+0.1
+0.2
carbon source
M9+sucrose
+0.1
+0.0
+0.2
+0.0
+0.0
plant
Tuber-Atlantic
-0.0
+0.0
+0.2
-0.2
+0.4
carbon source
M9+sucrose
+0.1
+0.1
+0.1
+0.2
-0.0
carbon source
M9+glucose
+0.3
+0.0
-0.0
+0.1
+0.1
carbon source
M9+glucose
+0.3
+0.1
+0.1
+0.1
+0.1
plant
Tuber-Atlantic
+0.2
+0.4
+0.1
-0.2
+0.1
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