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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS00640 and HER17_RS00645 are separated by 310 nucleotides
HER17_RS00645 and HER17_RS00650 are separated by 10 nucleotides
HER17_RS00650 and HER17_RS00655 overlap by 31 nucleotides
HER17_RS00655 and HER17_RS00660 are separated by 192 nucleotides
HER17_RS00640: HER17_RS00640 - hypothetical protein, at 147,608 to 147,904
_RS00640
HER17_RS00645: HER17_RS00645 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 148,215 to 148,679
_RS00645
HER17_RS00650: HER17_RS00650 - DUF3142 domain-containing protein, at 148,690 to 149,490
_RS00650
HER17_RS00655: HER17_RS00655 - hypothetical protein, at 149,460 to 151,634
_RS00655
HER17_RS00660: HER17_RS00660 - envelope stress sensor histidine kinase CpxA, at 151,827 to 153,197
_RS00660
Group
Condition
HER17
_RS00640
HER17
_RS00645
HER17
_RS00650
HER17
_RS00655
HER17
_RS00660
carbon source
M9+glucose
-0.2
-0.0
-0.1
+0.1
-3.1
carbon source
M9+starch
+0.1
-0.2
+0.0
-0.0
-3.1
carbon source
M9+glucose+arginine
-0.3
-0.0
+0.1
+0.1
-2.8
carbon source
M9+glucose+arginine
-0.1
-0.0
+0.2
+0.0
-2.9
carbon source
M9+glucose+arginine
+0.1
-0.0
+0.2
+0.0
-3.0
carbon source
M9+starch
-0.0
+0.0
+0.0
+0.1
-2.9
control
LB
-0.2
-0.0
+0.0
-0.0
-2.4
carbon source
M9+glucose
-0.3
+0.0
-0.0
+0.1
-2.5
carbon source
M9+polygalacturonate
-0.1
-0.1
+0.0
-0.1
-2.3
carbon source
M9+sucrose
-0.5
-0.1
+0.2
+0.1
-2.2
plant
Tuber-Atlantic
-0.8
-0.0
-0.4
+0.0
-1.2
carbon source
M9+glucose
+0.4
-0.2
-0.1
+0.1
-2.5
carbon source
M9+sucrose
-0.3
+0.0
+0.1
+0.0
-2.0
carbon source
M9+polygalacturonate
+0.0
+0.2
+0.1
+0.0
-2.4
control
LB
+0.2
-0.1
+0.2
+0.0
-2.3
carbon source
M9+sucrose
+0.2
-0.0
+0.1
+0.1
-2.3
control
LB
-0.3
-0.1
+0.0
+0.1
-1.5
carbon source
M9+polygalacturonate
-0.1
-0.0
+0.2
+0.0
-1.9
plant
Tuber-Atlantic
-1.0
+0.1
-0.0
+0.2
-0.5
control
LB
+0.0
-0.0
+0.0
+0.0
-0.9
control
LB
+0.3
-0.1
-0.1
+0.0
-1.0
plant
Tuber-Atlantic
-0.6
+0.1
+0.1
+0.2
-0.5
control
LB
+0.2
+0.1
+0.1
+0.1
-1.0
carbon source
M9+starch
+0.1
+0.2
+0.2
+0.1
-1.1
carbon source
M9+glycerol
-0.1
+0.1
-0.0
+0.0
-0.4
plant
Tuber-Atlantic
+0.1
+0.1
+0.0
+0.2
-0.5
carbon source
M9+glycerol
+0.1
-0.0
+0.2
+0.1
-0.4
carbon source
M9+glycerol
+0.4
+0.1
+0.2
+0.0
+0.3
carbon source
M9+glycerol
+0.0
-0.1
+0.1
-0.0
+1.0
carbon source
M9+glycerol
+0.1
+0.1
-0.0
-0.0
+1.7
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HER17_RS00650
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